PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41579.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 190aa    MW: 21199.7 Da    PI: 5.3039
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41579.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-172776255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  KFK41579.1 27 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDVAAFHFRG 76
                69****999.**********833...59*********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.47E-322686No hitNo description
SuperFamilySSF541712.03E-222685IPR016177DNA-binding domain
PROSITE profilePS5103223.632784IPR001471AP2/ERF domain
SMARTSM003803.9E-382790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-322785IPR001471AP2/ERF domain
PfamPF008475.7E-112776IPR001471AP2/ERF domain
PRINTSPR003678.5E-132839IPR001471AP2/ERF domain
PRINTSPR003678.5E-136686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAGLRNSTNS DKAQNDGQAV QGGVPSAYRG VRKRKWGKWV SEIREPGTKN RIWLGSFETP  60
EMAATAYDVA AFHFRGREAR LNFPELASSL PRPVDSTSDS IRTAAHEAVL CLKTEKPVES  120
AMQVDTSSSS NVGPTMVRLS PREIQAINES TLGSPTTMMH PIDDSMWFPN DMEMNVWDTY  180
QTQTDYLWDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-172884360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-150AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-150AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-150BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-150BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-150CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_177301.11e-110Integrase-type DNA-binding superfamily protein
SwissprotQ9C9I21e-111ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A087HHH71e-140A0A087HHH7_ARAAL; Uncharacterized protein
STRINGA0A087HHH71e-141(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-113ERF family protein