PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41620.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 382aa    MW: 43651.5 Da    PI: 8.003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41620.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00122042123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++Cg s s k++ ++Hi +H
  KFK41620.1 20 YLCQYCGISRSKKYLITSHILSH 42
                56*******************96 PP
2zf-C2H218.74.9e-066688123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ Cg  F+ + +Lk+H+ +H
  KFK41620.1 66 HNCQECGAEFKKPAHLKQHMLSH 88
                67*******************99 PP
3zf-C2H215.55e-0594118123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C   dC  s++rk++L+rH+ tH
  KFK41620.1  94 FTCYvdDCAASYRRKDHLNRHLLTH 118
                 789999*****************99 PP
4zf-C2H2224.4e-07175199123
                 EEET..TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                 ++C+   Cgk F+ +s+L++H+ +H
  KFK41620.1 175 HVCQevGCGKAFRYPSQLQKHQDSH 199
                 789999****************998 PP
5zf-C2H220.21.5e-06265287121
                 EEET..TTTEEESSHHHHHHHHH CS
     zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                 +kC+   C+ +Fs +snL++H++
  KFK41620.1 265 FKCEveGCSSTFSKPSNLQKHMK 287
                 89********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355252042IPR015880Zinc finger, C2H2-like
SMARTSM003550.00696688IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.3396693IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.6E-86693IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-1078120No hitNo description
PROSITE profilePS501579.9194123IPR007087Zinc finger, C2H2
SMARTSM003550.1194118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.4E-994120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028096118IPR007087Zinc finger, C2H2
SMARTSM003550.24123148IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808123153IPR007087Zinc finger, C2H2
PROSITE patternPS000280125148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.4E-9171199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.03E-7171201No hitNo description
PROSITE profilePS5015710.949175204IPR007087Zinc finger, C2H2
SMARTSM003550.0022175199IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280177199IPR007087Zinc finger, C2H2
SMARTSM003554.8207232IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280209232IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.7E-4209230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035525235256IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.3E-8246287IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.39E-5248288No hitNo description
SMARTSM003550.28265294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.78265304IPR007087Zinc finger, C2H2
SuperFamilySSF576671.91E-5296327No hitNo description
Gene3DG3DSA:3.30.160.605.2E-5296326IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.3305331IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280307331IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGEESNIDMD ASLIKDIRKY LCQYCGISRS KKYLITSHIL SHHKMEMEEE RDDEACEVEE  60
EALGKHNCQE CGAEFKKPAH LKQHMLSHSI ERPFTCYVDD CAASYRRKDH LNRHLLTHKG  120
KLFKCPMENC KSEFSVQGNV GRHIKEMHKN GDGSKDDIGN GDSHPTEGSI GQKPHVCQEV  180
GCGKAFRYPS QLQKHQDSHV KLDSVEAFCS EPGCMKYFTN DECLKAHIRS CHQHVNCEIC  240
GSKHLKKNIK RHLRTHDEDS APGVFKCEVE GCSSTFSKPS NLQKHMKAXX XXKHMKAVHE  300
DIRPFICGFP GCGMRFAYKH VRNNHENSGS HVYTCGDFVA TDENFTSRPR GGLKRKQVTA  360
EMLIRKRVMP PQFESQEEHK TC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5v3m_C3e-16533419309Zinc finger protein 568
5wjq_D2e-16203349284Zinc finger protein 568
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304781e-118AJ630478.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g72050D.
GenBankAY1866101e-118AY186610.1 Arabidopsis thaliana transcription factor IIIA (TFIIIA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415924.10.0PREDICTED: transcription factor IIIA
SwissprotQ84MZ40.0TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A087HHL80.0A0A087HHL8_ARAAL; Uncharacterized protein
STRINGA0A087HHL90.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.20.0transcription factor IIIA