PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41657.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 350aa    MW: 39025 Da    PI: 4.4628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41657.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.5e-2085136156
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                 sgykG+r ++ +grW+AeIrdp     +  r++lg+f++aeeAaka++  +k+++g+
  KFK41657.1  85 SGYKGIRKRP-WGRWAAEIRDPI----KgVRVWLGTFDSAEEAAKAYDLEAKRIRGA 136
                 89********.**********72....46*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-1385135IPR001471AP2/ERF domain
CDDcd000181.79E-3085145No hitNo description
SuperFamilySSF541711.44E-2185144IPR016177DNA-binding domain
SMARTSM003804.8E-3686149IPR001471AP2/ERF domain
PROSITE profilePS5103223.64486143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2987144IPR001471AP2/ERF domain
PRINTSPR003672.7E-108798IPR001471AP2/ERF domain
PRINTSPR003672.7E-10109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0034059Biological Processresponse to anoxia
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MCGGAVISDY IAPSWSDQGK NLRAGKSSWN RNGVVNLTTI ADFDIGDFDF AGVSPISSAT  60
RKPGGLNRSV NGVDDGTKKK KKNSSGYKGI RKRPWGRWAA EIRDPIKGVR VWLGTFDSAE  120
EAAKAYDLEA KRIRGAKAKL NFPNQDSRKR KADESWTMQH VEAKTKAKAD ESWIEEKAKA  180
VESVTVEQVE EKGETGLGLE VGGLVASSSF FEFLWEENDL DTVKIDTQWL EDVIVGDQEE  240
KRQEGYGGEA DVNARFSEEL LAFENQTEWE ENGVDRLQVD TQWLEDVIMG DSEKKKKKQE  300
SNGGEANVNG RFSEELLAFE NENESECFLQ TPFMEGNGHL DGGSDIDLWF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2087143663ATERF1
3gcc_A8e-2087143663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17793KKKKKNSSGYKGIRKRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00230DAPTransfer from AT1G72360Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390669.11e-90ethylene-responsive transcription factor ERF073
SwissprotQ8H0T53e-59ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLA0A087HHQ50.0A0A087HHQ5_ARAAL; Uncharacterized protein
STRINGA0A087HHQ50.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.28e-66ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]