PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41738.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family LBD
Protein Properties Length: 216aa    MW: 24799.1 Da    PI: 6.8367
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41738.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.32.5e-38161161101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++r+kC+k+C lapyfp+e++k+f n+hklFG+sn++k++k ++e++r++am+ l+++A+ara dPv G+++++ +l++++++ +ael+l+++
  KFK41738.1  16 ACAACKYQRKKCTKNCHLAPYFPQERQKQFLNAHKLFGVSNITKMIKGVEESQRDIAMHNLIFHANARALDPVGGVHKIMCDLKRKIDCCQAELNLVHQ 114
                 7*************************************************************************************************9 PP

      DUF260 100 el 101
                 +l
  KFK41738.1 115 QL 116
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.91615116IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3416113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSLSTNHGGS SSSSTACAAC KYQRKKCTKN CHLAPYFPQE RQKQFLNAHK LFGVSNITKM  60
IKGVEESQRD IAMHNLIFHA NARALDPVGG VHKIMCDLKR KIDCCQAELN LVHQQLAMYR  120
SLAQQQQQMQ RQREDLAFGC YSYGDLLEQE DDYVHVDGYD QNVQQHHVMM QQPEQNPLSY  180
EMFLERPDQT NKVKLEKEGI SDPEQDNLMS QILMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-24101195114LOB family transfactor Ramosa2.1
5ly0_B3e-24101195114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41738.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010416074.11e-105PREDICTED: LOB domain-containing protein 7-like
SwissprotQ9SSM92e-86LBD7_ARATH; LOB domain-containing protein 7
TrEMBLA0A087HHY61e-161A0A087HHY6_ARAAL; Uncharacterized protein
STRINGA0A087HHY61e-162(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.12e-78LOB domain-containing protein 7