PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK41975.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bZIP
Protein Properties Length: 163aa    MW: 17878.9 Da    PI: 7.0943
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK41975.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.52.5e-124686545
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                ++ +rkq+NRe+ArrsR RK++ ++ L+  v  L +eN++ 
  KFK41975.1 46 RKRKRKQSNRESARRSRMRKQKHLDDLTVQVNHLRKENSQI 86
                5789**********************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.8E-1742106IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.2E-114392No hitNo description
PROSITE profilePS5021710.86444107IPR004827Basic-leucine zipper domain
PfamPF001706.4E-104686IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.69E-114699No hitNo description
CDDcd147021.31E-184798No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MNKTEITGSS SSSISITGLQ NSGSITGLTN SGSESDLRER DLIDERKRKR KQSNRESARR  60
SRMRKQKHLD DLTVQVNHLR KENSQIVAGI AVTSQHYAAI EAENSVLRAQ LLELNHRFNS  120
LTEIVDFVET GFGIETGHGE LIDGGGGGLG FFDGVMNSMN LGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14550RKRKRK
24566RKRKRKQSNRESARRSRMRKQK
35865RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK41975.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887591.11e-75bZIP transcription factor 44
SwissprotC0Z2L52e-76BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A087HIM31e-112A0A087HIM3_ARAAL; Uncharacterized protein
STRINGA0A087HIM31e-113(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.19e-68basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]