PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42441.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 625aa    MW: 71643.5 Da    PI: 5.1925
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42441.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.84.6e-23105165259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dg++WrKYGqK++k s++ rsY+rCt+a   +C++ k+v++ ++ p+v  +tY g+H +e
  KFK42441.1 105 NDGFSWRKYGQKKIKTSTHLRSYFRCTYAkdiNCNAMKRVQKIQDSPSVYRTTYIGKHICE 165
                 8***************************99999*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081118.32699162IPR003657WRKY domain
SuperFamilySSF1182901.83E-21102165IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-22102166IPR003657WRKY domain
SMARTSM007747.8E-31104166IPR003657WRKY domain
PfamPF031061.7E-22105164IPR003657WRKY domain
TIGRFAMsTIGR015721.1E-62281517IPR006462Protein MS5
PfamPF047762.3E-19413510IPR006462Protein MS5
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MFPGANQAVE ALLRGQESAN RLKTVLENPR TSLVPTQHLF ETVLDSFSVA LSLFTNSTSS  60
NPQPHYESPQ STATPSVARK SPKKKRCMED GLEHYKVDSP TLLQNDGFSW RKYGQKKIKT  120
STHLRSYFRC TYAKDINCNA MKRVQKIQDS PSVYRTTYIG KHICEEVRSF SQPNDDIANG  180
SKILRFDQID QAMPESSVMP QLVPVDHQAI VIDYIDQFLN QECVMPQLVS VEHQETTEDE  240
GIDKIMNQEC DNNNKLVIDD EFWTTYPFSP DNSEFKRRLD EYRRQVKESD DFDVEPLIGP  300
HGMCMTGLVS YDCQGYWYPD RALVKRYATV GLDRYNILHG TNFKLCALIK FNVTSNCYNS  360
YYITLAARDK DSTQKTFQVQ VDEKSYGYLD VVCSVARVKD HQCALDSMVG GILPDWPSDD  420
DAFNDRDRYK NGSDLLDDDW IHPYLELAVF TKDRFIYSDE DLSNKLKIVK VAKETSEAKT  480
SIFYIAFTGM ATGEHVERKA IIKRVVNERG FLFLKGHLCK GKEDLIPMIS LEEYCKQHAN  540
DSYPPMSWEE CTQYVDGLYG RMEEEGEDLS ASKRWEESCK QRGVDPYPWG STPPMSWEEI  600
RRATSSKLVD AELHSYPAQS LPPVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-16105165969OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42441.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087HJY90.0A0A087HJY9_ARAAL; Uncharacterized protein
STRINGA0A087HJY90.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56091847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66550.23e-70WRKY DNA-binding protein 67