PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42455.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 226aa    MW: 25400.8 Da    PI: 10.399
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42455.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000176587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C + F ++  L  H++ H
  KFK42455.1 65 FSCNYCQRKFYSSQALGGHQNAH 87
                89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.62E-76292No hitNo description
PROSITE profilePS5015711.4276592IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDSSIKVDQE MLQLIKKRTH QDLELGLTLL PRGEASSELN LIDSFKKISS STSNHQEHLE  60
DPKVFSCNYC QRKFYSSQAL GGHQNAHKRE RTLAKRGHYY KMSVSSSSPS SAFAFGHGSV  120
RRFASMASLP LHGSASHRST LGIQVHSTIQ KPYLGRQTTS LSHVFKQSIH QKPTIGKMLP  180
EKFHLEVAGS NNSNVIASSK LESFGYFKNK QEDHNQFKKI DLTLKL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11519KKRTH
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the regulation of shoot development, downstream of photomorphogenic activation (Probable). Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development (PubMed:24808098). {ECO:0000269|PubMed:24808098, ECO:0000305|PubMed:8980531}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42455.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by white light in dark-grown seedlings. {ECO:0000269|PubMed:10794528}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_178188.11e-121zinc-finger protein 1
SwissprotQ424851e-122ZFP1_ARATH; Zinc finger protein 1
TrEMBLA0A087HK031e-165A0A087HK03_ARAAL; Uncharacterized protein
STRINGA0A087HK031e-166(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM118581628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.11e-119zinc-finger protein 1
Publications ? help Back to Top
  1. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]