PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42491.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 424aa    MW: 49207 Da    PI: 5.4759
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42491.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1301.8e-4071393128
         NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.... 95 
                 pGf F+P deelv +yL++k+ g++  ++e+i+ev+iy+++Pw+L+  +k+k++++ wyfF+++++kya+g+r++r+t++g+Wk tg   +v+++    
  KFK42491.1   7 PGFGFRPYDEELVGFYLRNKILGNNSLVQEAIREVKIYSYDPWKLRyqSKIKSRDHVWYFFCSKENKYANGDRQSRTTSNGFWKITGVPVKVVDQwgly 105
                 9************************999999**************85348899999**************************************97776 PP

         NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++g k+tLvf k +++kg+k+dWvm+e++ 
  KFK42491.1 106 gVPGVIGYKRTLVFQKDKNSKGVKSDWVMQEFHY 139
                 54556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-444158IPR003441NAC domain
PROSITE profilePS5100544.5515158IPR003441NAC domain
PfamPF023651.1E-207138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEMNDKPGFG FRPYDEELVG FYLRNKILGN NSLVQEAIRE VKIYSYDPWK LRYQSKIKSR  60
DHVWYFFCSK ENKYANGDRQ SRTTSNGFWK ITGVPVKVVD QWGLYGVPGV IGYKRTLVFQ  120
KDKNSKGVKS DWVMQEFHYT LLPENHQRSY VLCRLEYKGD DKNILLENAT DPTPTYVANM  180
TYSSGSVVDQ PVQENSGYFS EFESANHQGQ WFPRDSDMHQ SGSFNDLAEY DSTNQDQWLA  240
SGFNMQQQAP YSNPYGEESE MIWKYVVEEN HESLLDERMF MQNFSDHRPK NPVTGILAYD  300
SSDSDTDSMI GGDTSSFTDS VGSSNGPYHS AIDDILSSST IEPFHEAQEQ PKQGKEKVIN  360
KQRSEYEWKM AQDSIKKTPS TKTVKQNWIV LEKMHQRKSQ WIYLMNMIIG FLLFFSIIGW  420
IMLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-25215512165Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42491.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006418366.11e-164NAC domain-containing protein 1 isoform X2
SwissprotQ0WV961e-158NAC1_ARATH; NAC domain-containing protein 1
TrEMBLA0A087HK390.0A0A087HK39_ARAAL; Uncharacterized protein
STRINGA0A087HK390.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76581640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01010.11e-151NAC domain containing protein 1
Publications ? help Back to Top
  1. Davuluri RV, et al.
    AGRIS: Arabidopsis gene regulatory information server, an information resource of Arabidopsis cis-regulatory elements and transcription factors.
    BMC Bioinformatics, 2003. 4: p. 25
    [PMID:12820902]
  2. Palaniswamy SK, et al.
    AGRIS and AtRegNet. a platform to link cis-regulatory elements and transcription factors into regulatory networks.
    Plant Physiol., 2006. 140(3): p. 818-29
    [PMID:16524982]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]