PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK42525.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 293aa MW: 33922.6 Da PI: 9.1375

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK42525.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	118.9	4.9e-37	7	137	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 +G+rF+Ptd elv++yL++k ++++ +++++v+++++i +++Pw+L + +k+e++ wyfF ++++ky++g+r+ r+tksg+Wk+tgk +e++ KFK42525.1 7 VGYRFRPTDVELVDNYLQPKNDESSdggdttNHVDRVFNTLNISSFDPWELCdqSIMKSEDQVWYFFGRKENKYNRGDRQMRKTKSGFWKKTGKPTEIK 105 7*****************99999888887777778999*******64347788999********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +k+ge++g k +Lvf+ kt+W+mhey+l KFK42525.1 106 RKNGEKIGEKCVLVFHW---TCKLKTEWIMHEYHL 137 ************3...44468******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.339	5	155	IPR003441	NAC domain
SuperFamily	SSF101941	7.19E-41	6	155	IPR003441	NAC domain
Pfam	PF02365	1.0E-22	7	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MANPTVVGYR FRPTDVELVD NYLQPKNDES SDGGDTTNHV DRVFNTLNIS SFDPWELCDQ 60 SIMKSEDQVW YFFGRKENKY NRGDRQMRKT KSGFWKKTGK PTEIKRKNGE KIGEKCVLVF 120 HWTCKLKTEW IMHEYHLFSP DQITRTYTVC KVKFKGKASE ISSHRGDIEQ IHSSITQMNN 180 SGGLSIGSEV GTLFECPQSQ EVENQQQLSG PLMMMMMIRY LQQHFGSSNH RIDQITNLQE 240 SPNSTIKLSQ KVNQTPSQET KILGQEKTKD KRAGFFYSIM QMFIKKIQLC TSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-17	8	142	20	147	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-17	8	142	20	147	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-17	8	142	20	147	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-17	8	142	20	147	NO APICAL MERISTEM PROTEIN
3swm_A	1e-17	8	142	23	150	NAC domain-containing protein 19
3swm_B	1e-17	8	142	23	150	NAC domain-containing protein 19
3swm_C	1e-17	8	142	23	150	NAC domain-containing protein 19
3swm_D	1e-17	8	142	23	150	NAC domain-containing protein 19
3swp_A	1e-17	8	142	23	150	NAC domain-containing protein 19
3swp_B	1e-17	8	142	23	150	NAC domain-containing protein 19
3swp_C	1e-17	8	142	23	150	NAC domain-containing protein 19
3swp_D	1e-17	8	142	23	150	NAC domain-containing protein 19
4dul_A	1e-17	8	142	20	147	NAC domain-containing protein 19
4dul_B	1e-17	8	142	20	147	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK42525.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	7e-69	NAC domain containing protein 5
Swissprot	O81914	6e-70	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A087HK73	0.0	A0A087HK73_ARAAL; Uncharacterized protein
STRING	A0A087HK73	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	2e-72	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]