PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK42526.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 364aa MW: 41830.8 Da PI: 6.8549

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK42526.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	124.9	6.9e-39	6	131	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 +GfrF+Ptdee++++yL++k +++ +++++v+++++i +++Pw+L+ + +k+e++ w fF ++++ky++g+r+ r+tksgyWk+tgk +e+++k+ge KFK42526.1 6 VGFRFRPTDEEILKDYLRPKNLDNNtNHVDRVFNTINISSFDPWELRdQsIMKSEDQVWCFFGRKENKYNRGDRQIRKTKSGYWKKTGKPTEIKRKNGE 104 7****************9776663777778**********85347788999************************************** PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 ++g k +Lvf+ ++ +kt+Wvmhey+l KFK42526.1 105 KIGEKWVLVFHM---SNKKKTKWVMHEYHL 131 *******4...33458******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.59	4	149	IPR003441	NAC domain
SuperFamily	SSF101941	1.23E-43	4	149	IPR003441	NAC domain
Pfam	PF02365	5.1E-22	6	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MVNPVVGFRF RPTDEEILKD YLRPKNLDNN TNHVDRVFNT INISSFDPWE LRDQSIMKSE 60 DQVWCFFGRK ENKYNRGDRQ IRKTKSGYWK KTGKPTEIKR KNGEKIGEKW VLVFHMSNKK 120 KTKWVMHEYH LFSPDQVMMT YTVCKVKFKG EASEISSPPT GEIEHNHSDI TQMNSSRGLS 180 TGSEVGTAFE CLQSQEIEIP PQFSGLPDVF EETQLTYDAM HKDISNMSTD GFNNLLNDDA 240 YEQRKVMFMQ ENRSNHGPKK PITGVFIGYS SDDDDDDDIS ATTGSIQTST TCDDSFGSSN 300 HRVDQLTDLQ ESPNSTIKSS QNVDHTPSQE TKILGQEKTK NKRAGFFYRI IQRLIKKIQL 360 CTSI

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MVNPVVGFRF RPTDEEILKD YLRPKNLDNN TNHVDRVFNT INISSFDPWE LRDQSIMKSE  60
DQVWCFFGRK ENKYNRGDRQ IRKTKSGYWK KTGKPTEIKR KNGEKIGEKW VLVFHMSNKK  120
KTKWVMHEYH LFSPDQVMMT YTVCKVKFKG EASEISSPPT GEIEHNHSDI TQMNSSRGLS  180
TGSEVGTAFE CLQSQEIEIP PQFSGLPDVF EETQLTYDAM HKDISNMSTD GFNNLLNDDA  240
YEQRKVMFMQ ENRSNHGPKK PITGVFIGYS SDDDDDDDIS ATTGSIQTST TCDDSFGSSN  300
HRVDQLTDLQ ESPNSTIKSS QNVDHTPSQE TKILGQEKTK NKRAGFFYRI IQRLIKKIQL  360
CTSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-19	7	136	20	147	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-19	7	136	20	147	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-19	7	136	20	147	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-19	7	136	20	147	NO APICAL MERISTEM PROTEIN
3swm_A	2e-19	7	136	23	150	NAC domain-containing protein 19
3swm_B	2e-19	7	136	23	150	NAC domain-containing protein 19
3swm_C	2e-19	7	136	23	150	NAC domain-containing protein 19
3swm_D	2e-19	7	136	23	150	NAC domain-containing protein 19
3swp_A	2e-19	7	136	23	150	NAC domain-containing protein 19
3swp_B	2e-19	7	136	23	150	NAC domain-containing protein 19
3swp_C	2e-19	7	136	23	150	NAC domain-containing protein 19
3swp_D	2e-19	7	136	23	150	NAC domain-containing protein 19
4dul_A	2e-19	7	136	20	147	NAC domain-containing protein 19
4dul_B	2e-19	7	136	20	147	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00123	DAP	Transfer from AT1G02250	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK42526.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_171727.2	1e-120	NAC domain containing protein 5
Swissprot	O81914	1e-121	NAC5_ARATH; NAC domain-containing protein 5
TrEMBL	A0A087HK74	0.0	A0A087HK74_ARAAL; Uncharacterized protein
STRING	A0A087HK74	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2315	16	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02250.1	1e-120	NAC domain containing protein 5

Publications ? help Back to Top
Jiang J,Zhang Z,Cao J Pollen wall development: the associated enzymes and metabolic pathways. Plant Biol (Stuttg), 2013. 15(2): p. 249-63 [PMID:23252839]