PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42574.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 259aa    MW: 29124.8 Da    PI: 6.3724
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42574.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.001784106123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k+F ++  L  H  +H
  KFK42574.1  84 FQCKACKKVFASHQALGGHRASH 106
                 89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.3E-983108IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-583106No hitNo description
SMARTSM003550.09884106IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.01484111IPR007087Zinc finger, C2H2
PROSITE patternPS00028086106IPR007087Zinc finger, C2H2
SuperFamilySSF576671.42E-5153180No hitNo description
PfamPF139129.4E-13157181IPR007087Zinc finger, C2H2
SMARTSM003550.51158180IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307158180IPR007087Zinc finger, C2H2
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNSSSCIDFI MFSRGQHDED NMSRRPWKRE RSNHVNLSPN EDEELANCLV LLSNSGDAYD  60
DSNNNKHGHG KGKTVKKQKT AQVFQCKACK KVFASHQALG GHRASHKKVK GCFASQDKEE  120
EEEEEYKEDD DEDEEEDDEE DHEGRSTTHI ARKRSNAHEC TICHRVFSSG QALGGHKRCH  180
WLTPSNYLRM TSLHDHHHHA GRPQQLDQPS LDLNLACQEY SVDPTVMSVG MIGRDGGGGT  240
INHNATSSSW LKLASGDWS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42574.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0300400.0BT030040.1 Arabidopsis thaliana At1g02040 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU899590.0U89959.1 Arabidopsis thaliana BAC T7I23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002889340.21e-143uncharacterized protein LOC9325404
TrEMBLA0A087HKC20.0A0A087HKC2_ARAAL; Uncharacterized protein
STRINGA0A087HKC20.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-25C2H2-like zinc finger protein