PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK42724.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

ERF

Protein Properties

Length: 159aa MW: 17443.8 Da PI: 8.2057

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK42724.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.6	7.6e-19	5	54	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+++AeI+ p++ ++r++lg+f+taeeAa+a++ a+++++g KFK42724.1 5 RYRGVRKRP-WGKYAAEIHPPRN---KRRVWLGTFDTAEEAARAYDSAAREFRG 54 6******.****99843...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	4.4E-14	5	54	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.4E-31	5	63	IPR001471	AP2/ERF domain
CDD	cd00018	2.50E-30	5	62	No hit	No description
SuperFamily	SSF54171	2.22E-22	5	63	IPR016177	DNA-binding domain
PROSITE profile	PS51032	23.907	5	62	IPR001471	AP2/ERF domain
SMART	SM00380	7.7E-36	5	68	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-12	6	17	IPR001471	AP2/ERF domain
PRINTS	PR00367	6.8E-12	28	44	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MEEVRYRGVR KRPWGKYAAE IHPPRNKRRV WLGTFDTAEE AARAYDSAAR EFRGSKAITN 60 FPLTEDGGNA SATARKGTFP CSGVLSTAVG EIFSYPMHAT ALREELVRGC PVQFEPIALG 120 LSLGLGTAVE VDREASSVVD YKLRRELNLD LSLGPSVDV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	5e-22	2	62	11	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00124	DAP	Transfer from AT1G03800	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK42724.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013639092.1	6e-62	PREDICTED: ethylene-responsive transcription factor 9-like
Refseq	XP_013694210.1	6e-62	ethylene-responsive transcription factor 9
Swissprot	Q9ZWA2	4e-46	ERF77_ARATH; Ethylene-responsive transcription factor 10
TrEMBL	A0A087HKS2	1e-112	A0A087HKS2_ARAAL; Ethylene-responsive transcription factor
STRING	A0A087HKS2	1e-113	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03800.1	3e-39	ERF domain protein 10

Publications ? help Back to Top
Lehmeyer M, et al. Functional dissection of a strong and specific microbe-associated molecular pattern-responsive synthetic promoter. Plant Biotechnol. J., 2016. 14(1): p. 61-71 [PMID:25819608]