PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42784.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 205aa    MW: 22717.9 Da    PI: 10.1331
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42784.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.4e-061840223
                EETTTTEEESSHHHHHHHHHH.T CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                +Cp C++ Fs++  L++H +t H
  KFK42784.1 18 QCPVCNRIFSTPQGLVTHFNTfH 40
                7*****************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.61745IPR007087Zinc finger, C2H2
PROSITE patternPS0002801940IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MMSGYGMRSG PVRFSKPQCP VCNRIFSTPQ GLVTHFNTFH SNHHLSTYSS AVAAAAVAVR  60
PTFHHYPTLN RNPNPVVYRN PNPVVNRNPN PVVNRNPSSV VFPARNSFDL TYYERGYLDT  120
QGRFLKGLPP AMTPAPAMTP AKRSNVLFEQ QNKKPRLVEF LQATENGGYG LTLPLICQLE  180
HQIPVETVTE NGGAISSSID LTLRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087HKY21e-149A0A087HKY2_ARAAL; Uncharacterized protein
STRINGA0A087HKY21e-149(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM135511321
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04445.14e-23C2H2-like zinc finger protein