PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42845.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 406aa    MW: 45001.2 Da    PI: 8.723
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42845.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.4e-114267126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ++++ C+f++rtG C yG++C+++H+
  KFK42845.1 42 PGERDCQFYLRTGLCGYGSTCRYNHP 67
                5789*********************9 PP
2zf-CCCH36.29.9e-1286111227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +++ C +f++tG CkyG++Ck++H++
  KFK42845.1  86 GQPDCEYFLKTGACKYGSTCKYHHPK 111
                 789*********************96 PP
3zf-CCCH34.82.8e-11131155226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++++C++++rtG C++G  CkF+H+
  KFK42845.1 131 GEKPCPYYLRTGSCRFGVACKFHHP 155
                 689*********************8 PP
4zf-CCCH37.73.3e-12265288326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 +++Crff+ tGtCkyGd Ck++H+
  KFK42845.1 265 QPECRFFMSTGTCKYGDDCKYNHP 288
                 689********************8 PP
5zf-CCCH28.52.6e-09309335127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C +f+ +G+Ck+G++CkF H++
  KFK42845.1 309 PGQPACGNFRSYGFCKFGPTCKFDHPM 335
                 57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54168IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9954169IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-84367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-54568IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-684111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.52584112IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-985111IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-688112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-490110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.563129157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6129158IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5133155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.375262290IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7263289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6264288IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-10265288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5268287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5305334IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5308335IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.404308336IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7310335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MRPMSDTTQH VHSSIRSSDK IEDAFKKMKV NENGSNLYPD RPGERDCQFY LRTGLCGYGS  60
TCRYNHPTHI PQGIIYQKEE LPERFGQPDC EYFLKTGACK YGSTCKYHHP KDRNGAEPVL  120
FNVIGLPMRQ GEKPCPYYLR TGSCRFGVAC KFHHPHPDNG HSTAYGMSSF PPAGLQYGGG  180
LTMMSLPPAT YGTMPRPQVP QSYVPVMVSP SQGLLPPQAW ATYMAASNPI YNVVKNQPYY  240
STSSASMPMA MAMALNHGLP EKSEQPECRF FMSTGTCKYG DDCKYNHPGV RMSPPPPNLI  300
NSFVLPARPG QPACGNFRSY GFCKFGPTCK FDHPMLPYQG LTMPPSLPTP YATPVSSTHQ  360
RISPSPSRSD SKPLSNGKPD VKKEISKTEK PETDTEQLKN SGVQEP
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42845.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892258.10.0zinc finger CCCH domain-containing protein 3 isoform X1
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A087HL430.0A0A087HL43_ARAAL; Uncharacterized protein
STRINGA0A087HL430.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]