PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42926.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 324aa    MW: 36410.7 Da    PI: 8.4543
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42926.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.7e-53161421128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++++ ++++
  KFK42926.1  16 LPPGFRFHPTDEELVVHYLKKKAASIQLPV-SIIAEIDLYKFDPWELPSKASFGEHEWYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK 113
                 79****************************.89***************9888999******************************************** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfy g+ pkg ktdW+mheyrl
  KFK42926.1 114 VGVKKALVFYGGKPPKGIKTDWIMHEYRL 142
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-648178IPR003441NAC domain
PROSITE profilePS5100560.08916177IPR003441NAC domain
PfamPF023651.2E-2717142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MENMGDSSIG PGHPHLPPGF RFHPTDEELV VHYLKKKAAS IQLPVSIIAE IDLYKFDPWE  60
LPSKASFGEH EWYFFSPRDR KYPNGVRPNR AATSGYWKAT GTDKPIFTCN SHKVGVKKAL  120
VFYGGKPPKG IKTDWIMHEY RLTDGNLSTT AKPPDPVTTR KNSLRLDDWV LCRIYKKNSS  180
QRPTMERILL REDLMEGMLS KSSANSSSTS VLDNNDNNNN NNNEEHFFDG MVVSSDKRSL  240
CGQYRMGHEA SGSSSFGSFL SSKRFHHTSD LNNDNYNVSF VSMLSEIPQS SGFHGNGAID  300
TTSSLADHGV LRQAFQLPTM NWHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A6e-741618020171NAC domain-containing protein 19
3swm_B6e-741618020171NAC domain-containing protein 19
3swm_C6e-741618020171NAC domain-containing protein 19
3swm_D6e-741618020171NAC domain-containing protein 19
3swp_A6e-741618020171NAC domain-containing protein 19
3swp_B6e-741618020171NAC domain-containing protein 19
3swp_C6e-741618020171NAC domain-containing protein 19
3swp_D6e-741618020171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1178780.0AK117878.1 Arabidopsis thaliana At1g61110 mRNA for unknown protein, complete cds, clone: RAFL19-05-K20.
GenBankBT0083460.0BT008346.1 Arabidopsis thaliana At1g61110 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010473311.10.0PREDICTED: NAC transcription factor 25-like
SwissprotQ8GY420.0NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A087HLC40.0A0A087HLC4_ARAAL; Uncharacterized protein
STRINGA0A087HLC40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.10.0NAC domain containing protein 25