PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK42944.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family bHLH
Protein Properties Length: 241aa    MW: 27796.9 Da    PI: 9.2787
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK42944.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.7e-05981311854
                 HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++++ Lr l+P +      K + a+i++ A+eYIk+L
  KFK42944.1  98 DSMNILRNLIPIP---IPIKKDRASIVKYAIEYIKEL 131
                 67889*******9...7888999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-43959IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-698139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-598139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-498136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSLLKSAYHR TDFMEEIRIT VGESDFPPAK MQPPVLVTRS RFADWMNVLR NLIPNLIKVT  60
IYILTSLTKK TVPESNFPPA EMQPRVLVVT RSLGLFADSM NILRNLIPIP IPIKKDRASI  120
VKYAIEYIKE LLRAIEEIKV LVERKKVHRK SDLAEFDVQI VKDEVTIKIE QKKKDINCLL  180
FVSKVIDQLQ LELYHVAGEE HKFLFKAKIC EGTRVHANVI ADTIVEVVEK EYMDALWTQL  240
G
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK42944.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002892324.16e-44transcription factor bHLH89
RefseqXP_020870756.16e-44transcription factor bHLH89
SwissprotQ9LND02e-42BH089_ARATH; Transcription factor bHLH89
TrEMBLA0A087HLE21e-175A0A087HLE2_ARAAL; Uncharacterized protein
STRINGA0A087HLE21e-175(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06170.21e-41bHLH family protein
Publications ? help Back to Top
  1. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]