PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK43106.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 134aa MW: 14493.7 Da PI: 8.4814

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK43106.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	137.7	4e-43	32	131	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r da++s+vyeA ar+rdPvyG++g i +lq+q+++l+a+la+++ KFK43106.1 32 PCAACKILRRRCGENCVLAPYFPPTEPAKFTIAHRVFGASNIIKLLQELPESQRADAVNSMVYEAGARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQV 130 7**********************************************************************************************9986 PP DUF260 100 e 100 e KFK43106.1 131 E 131 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.238	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.7E-43	32	129	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 134 aa Download sequence Send to blast
MENKGEASPS IISASPTSSP PPPPSPRMVL SPCAACKILR RRCGENCVLA PYFPPTEPAK 60 FTIAHRVFGA SNIIKLLQEL PESQRADAVN SMVYEAGARI RDPVYGCAGA IYHLQRQVSE 120 LQAQLAKAQV EIGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-42	31	132	10	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-42	31	132	10	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK43106.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473841	1e-113	AB473841.1 Arabidopsis thaliana ASL8 mRNA for ASYMMETRIC LEAVES2-like 8 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018480879.1	2e-78	PREDICTED: LOW QUALITY PROTEIN: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-69	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A087HLV4	9e-93	A0A087HLV4_ARAAL; Uncharacterized protein
STRING	A0A087HLV4	1e-93	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-71	LOB domain-containing protein 1