PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43109.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NF-YC
Protein Properties Length: 211aa    MW: 23550.1 Da    PI: 7.5106
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43109.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC46.67.4e-151071931399
       NF-YC  13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                 +++ k  ++P+ ri++i++ d+   +i  +a  l+ ka e+fi  ++  ++  + + k++ ++   ++++v++ + ++fl d vp++
  KFK43109.1 107 VEEAKSFRFPMNRIRRIMRNDDSAPQIMQDAVFLVNKATEMFIERFSEEAYESSVQDKKKFIHYKHLSSVVSNDNRYEFLADCVPEK 193
                 56778899****************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471135.7E-19106192IPR009072Histone-fold
PfamPF008081.2E-21114177IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.108.1E-24115192IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MVSSKKSSKE TKPRSDGVNN TGARSTRSSG AKTKKNPSNN ANSRDIVKKD PEVYEISESS  60
STGSVDEARG GDVSNKGRNG KGVVIPTKKR KNGEEEEEGE NVNGGSVEEA KSFRFPMNRI  120
RRIMRNDDSA PQIMQDAVFL VNKATEMFIE RFSEEAYESS VQDKKKFIHY KHLSSVVSND  180
NRYEFLADCV PEKLKAEDAL EEWEKAMTDA V
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43109.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2290114e-97AK229011.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-31-C07.
GenBankAK2292664e-97AK229266.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-54-O22.
GenBankAY0868154e-97AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence.
GenBankBT0252664e-97BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023645785.11e-86nuclear transcription factor Y subunit gamma
TrEMBLA0A087HLV71e-152A0A087HLV7_ARAAL; Uncharacterized protein
STRINGA0A087HLV71e-152(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111902231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-69nuclear factor Y, subunit C10