PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43143.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 260aa    MW: 29695.8 Da    PI: 8.492
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43143.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05103122120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 + C++C+k+F+r  n++ H+
  KFK43143.1 103 FACSICSKTFNRYNNMQMHM 122
                 78*****************9 PP
2zf-C2H211.40.001188210123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cgk    k + ++H +++
  KFK43143.1 188 FSCGKCGKALAVKGDWRTHEKNC 210
                 89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.98E-982126No hitNo description
SMARTSM003550.17103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.45103130IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.9E-6103122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SMARTSM00355170151183IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.02E-5173208No hitNo description
Gene3DG3DSA:3.30.160.606.9E-4174208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355190188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MESKSRQALD DIKEEKDDDV VTLQIGLPNY HRGSSAEEES DTTTDHDQKK PIKREIIEDG  60
VVMMKKRRKI KFHDEEIGSD MEVCGKRFWI PSPAQIHVGP MQFACSICSK TFNRYNNMQM  120
HMWGHGSEFR KGADSLKGTT QPAAILRLPC YCCAEGCKNN INHPRSKPLK DFRTLQTHYK  180
RKHGSKPFSC GKCGKALAVK GDWRTHEKNC GKLWYCTCGS DFKHKRSLKD HIKSFGNGHS  240
PHPSLLFDGF EEETECVTTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43143.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2544480.0AF254448.1 Arabidopsis thaliana WIP3 protein (WIP3) mRNA, complete cds.
GenBankAK1188510.0AK118851.1 Arabidopsis thaliana At1g08290 mRNA for unknown protein, complete cds, clone: RAFL21-18-A22.
GenBankAY0909180.0AY090918.1 Arabidopsis thaliana unknown protein (At1g08290) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010475619.11e-180PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-173ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A087HLZ10.0A0A087HLZ1_ARAAL; Uncharacterized protein
STRINGA0A087HLZ10.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-168WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]