PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK43154.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

YABBY

Protein Properties

Length: 184aa MW: 20746.6 Da PI: 9.5466

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK43154.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	256.7	3.7e-79	2	160	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssek 100 +++ sse+vCyv+CnfC+tilavsvP++slf++vtvrCGhCt+lls+n+ ++ ++ ++ ++++++l+ ++++++s v+++++ s+s+++++ KFK43154.1 2 SMDLSSERVCYVHCNFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQSST---------PPIHQDLQPHKQHITSSVSRKDCGSSSRNTNN 91 67789******************************************998876554.........569************************* PP YABBY 101 lsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +sen d+e+pr+pp irPPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl KFK43154.1 92 FSENIDREAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGL 160 ********99.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.4E-70	6	160	IPR006780	YABBY protein
SuperFamily	SSF47095	1.15E-7	105	153	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.6E-4	108	154	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSMDLSSERV CYVHCNFCTT ILAVSVPYAS LFTLVTVRCG HCTNLLSLNI GVSLHQSSTP 60 PIHQDLQPHK QHITSSVSRK DCGSSSRNTN NFSENIDREA PRMPPIRPPE KRQRVPSAYN 120 RFIKEEIQRI KACNPEISHR EAFSTAAKNW AHFPHIHFGL KLDGNKKGKQ LDQTVAGQKS 180 NGYY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK43154.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF136539	0.0	AF136539.1 Arabidopsis thaliana YABBY2 (YABBY2) mRNA, complete cds.
GenBank	BT004243	0.0	BT004243.1 Arabidopsis thaliana clone RAFL15-27-O09 (R20923) At1g08465 mRNA, complete sequence.
GenBank	DQ108871	0.0	DQ108871.1 Arabidopsis thaliana clone 6413 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001077490.1	1e-129	Plant-specific transcription factor YABBY family protein
Swissprot	Q9XFB0	1e-130	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A087HM02	1e-136	A0A087HM02_ARAAL; Uncharacterized protein
STRING	A0A087HM02	1e-137	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5581	27	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-133	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]