PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK43603.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

Trihelix

Protein Properties

Length: 390aa MW: 44069.1 Da PI: 6.9609

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK43603.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.9	4.8e-27	75	157	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rr m+ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk k+++++ ++ s +++y++++e KFK43603.1 75 WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISNKMRDKGFDRSPTMCTDKWRNLLKEFKKAKHHDRG--NGGSAKMSYYKEIE 157 ******************************************************************9..688889***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-4	65	136	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.037	67	131	IPR017877	Myb-like domain
SMART	SM00717	0.0084	71	133	IPR001005	SANT/Myb domain
CDD	cd12203	1.38E-29	73	138	No hit	No description
Pfam	PF13837	6.9E-20	74	158	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MFLSDNTNSS TTGRSNMIID VTTNNGGASG GTVDLRPHNH HNNLQPQQQQ ILLGESSGGE 60 DSHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISNK MRDKGFDRSP 120 TMCTDKWRNL LKEFKKAKHH DRGNGGSAKM SYYKEIEDIL RERSKKVNTQ YSKSPTTPPT 180 AKVDSFMQFT DKGFDDTSIS FGSVEANGRP ALNLETRLDH DGHPLAITAV DAVAANGVPP 240 WNWRETPGNG SDAQVFGGRV ITVKFGDYTR RIGVDGSSEA IKETIRSAFG LRTKRAFWLE 300 DEDQVVRCLD RDMPLGNYLL HVDDGLAIRV CHYDESNQLP VHTEEKIFYT EEDYRDFLAR 360 RGWTCLQVDG FRNIDSMDDL QPGAVYRGVR

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MFLSDNTNSS TTGRSNMIID VTTNNGGASG GTVDLRPHNH HNNLQPQQQQ ILLGESSGGE  60
DSHEVKAPKK RAETWVQDET RSLIMFRRGM DGLFNTSKSN KHLWEQISNK MRDKGFDRSP  120
TMCTDKWRNL LKEFKKAKHH DRGNGGSAKM SYYKEIEDIL RERSKKVNTQ YSKSPTTPPT  180
AKVDSFMQFT DKGFDDTSIS FGSVEANGRP ALNLETRLDH DGHPLAITAV DAVAANGVPP  240
WNWRETPGNG SDAQVFGGRV ITVKFGDYTR RIGVDGSSEA IKETIRSAFG LRTKRAFWLE  300
DEDQVVRCLD RDMPLGNYLL HVDDGLAIRV CHYDESNQLP VHTEEKIFYT EEDYRDFLAR  360
RGWTCLQVDG FRNIDSMDDL QPGAVYRGVR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2jmw_A	8e-54	69	155	1	86	DNA binding protein GT-1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269\|PubMed:10437822, ECO:0000269\|PubMed:15044016, ECO:0000269\|PubMed:7866025}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00004	PBM	Transfer from 920224	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK43603.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228305	0.0	AK228305.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-74-C23.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024009039.1	0.0	trihelix transcription factor GT-1
Swissprot	Q9FX53	0.0	TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBL	A0A087HNA1	0.0	A0A087HNA1_ARAAL; Uncharacterized protein
STRING	A0A087HNA1	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2891	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	0.0	Trihelix family protein

Publications ? help Back to Top
Le Gourrierec J,Li YF,Zhou DX Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex. Plant J., 1999. 18(6): p. 663-8 [PMID:10417717]