PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43702.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family G2-like
Protein Properties Length: 250aa    MW: 28650.8 Da    PI: 8.514
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43702.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.92e-322477255
     G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                prlrWtpeLH++Fv+ave LGG+ kAtPk +l++m+vkgLt++hvkSHLQ+YR 
  KFK43702.1 24 PRLRWTPELHRSFVHAVELLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRG 77
                8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.1652080IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-292077IPR009057Homeodomain-like
SuperFamilySSF466891.97E-152476IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-222476IPR006447Myb domain, plants
PfamPF002492.1E-82576IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRCGRSNDG GIGGVRPYVR SPVPRLRWTP ELHRSFVHAV ELLGGQYKAT PKLVLKIMDV  60
KGLTISHVKS HLQMYRGSRP SLLGKLEESS SSSSRRRRRQ DNEEDHLHDN LSVHARNDCL  120
LGFHSFNFRE QTSGTDNDDD DFLNIMNMER TKTFAGYGES IKFQSHHFLE AQSTKNHWEN  180
TWRENKEEEE LSLSLSLNHP HNNQQRWRSH ASSSLSETSE AVSSPSIFRD CFVSSKIDLN  240
LNLSFSLLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192579357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43702.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304860.0AJ630486.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g14600.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866305.11e-141putative Myb family transcription factor At1g14600 isoform X2
SwissprotQ700D91e-136MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A087HNK00.0A0A087HNK0_ARAAL; Uncharacterized protein
STRINGA0A087HNK00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.11e-117G2-like family protein