PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK43864.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

LBD

Protein Properties

Length: 162aa MW: 18063.9 Da PI: 8.5958

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK43864.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.9	7e-43	17	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC kdCv+apyfpa++p kfa+vhk+FGasnv k+l+ lpe++r+da++s+vyeA ar++dPvyG+vg+i++l++qle l+++la +++ KFK43864.1 17 PCAACKLLRRKCLKDCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQVLPENHRSDAVNSMVYEAIARVQDPVYGCVGTISSLHRQLEALQTQLAFAQA 115 7**********************************************************************************************9998 PP DUF260 100 e 100 e KFK43864.1 116 E 116 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.935	16	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-41	17	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MGPMRQKGQR HGGAVSPCAA CKLLRRKCLK DCVFAPYFPA KEPYKFAIVH KIFGASNVNK 60 MLQVLPENHR SDAVNSMVYE AIARVQDPVY GCVGTISSLH RQLEALQTQL AFAQAELVHI 120 KTLHRFDTKP LPFTFPTNKD FSGDVDMAFV YEDGAGESLW SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-44	13	118	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-44	13	118	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK43864.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473842	1e-131	AB473842.1 Arabidopsis thaliana ASL9 mRNA for ASYMMETRIC LEAVES2-like 9 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020869105.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869106.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869107.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869108.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869109.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869110.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869111.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869112.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869113.1	1e-100	LOB domain-containing protein 3
Refseq	XP_020869114.1	1e-100	LOB domain-containing protein 3
Swissprot	Q9SA51	5e-95	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A087HP12	1e-119	A0A087HP12_ARAAL; Uncharacterized protein
STRING	A0A087HP12	1e-120	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	2e-97	ASYMMETRIC LEAVES 2-like 9

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]