PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK43925.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family M-type_MADS
Protein Properties Length: 211aa    MW: 23992.4 Da    PI: 7.612
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK43925.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.17.1e-215098149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k i+ +s+rqvtfskRr g++KKA ELSvL +a++a+i fs+t++++ +
  KFK43925.1 50 KEIKVESKRQVTFSKRRRGLFKKAAELSVLAGAKIAIITFSKTDRIFKF 98
                578999**************************************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.68942102IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-2342101IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-2243120IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-184464IPR002100Transcription factor, MADS-box
PfamPF003191.1E-195298IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-186479IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-1879100IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEEVSETSSI TFLTPNGQLQ NPNVPVSQPK MELTKQSPRT SRGRQKIEIK EIKVESKRQV  60
TFSKRRRGLF KKAAELSVLA GAKIAIITFS KTDRIFKFGH VDTLIDKYLR NSPVSLEVHS  120
GDDVVEEEAR MSWWEQSVEN VPEEELEAYV AAMSLLRENL GKRIIEMRND RTVGVVPEWP  180
INMVGWNPTV DMQHLENLTD GIARCRVGQN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1c7u_A9e-1543126185MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
1c7u_B9e-1543126185MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK43925.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416719.26e-97MADS-box transcription factor 23
TrEMBLA0A087HP731e-154A0A087HP73_ARAAL; Uncharacterized protein
STRINGA0A087HP731e-155(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46972052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17310.13e-95M-type_MADS family protein