PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44061.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 183aa    MW: 20755.7 Da    PI: 4.4511
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44061.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.25.7e-201262155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                s+y+GVr +k +g+WvAeIr p++   r r++lg+++t+e+Aa+a +aa  +l+g
  KFK44061.1 12 SKYTGVRKRK-WGKWVAEIRIPNS---RERIWLGSYDTPEKAARAFDAALFCLRG 62
                89*****999.**********933...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.70E-291272No hitNo description
SuperFamilySSF541713.79E-211271IPR016177DNA-binding domain
PfamPF008474.2E-131262IPR001471AP2/ERF domain
PROSITE profilePS5103221.9971370IPR001471AP2/ERF domain
SMARTSM003802.3E-321376IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-291371IPR001471AP2/ERF domain
PRINTSPR003673.4E-91425IPR001471AP2/ERF domain
PRINTSPR003673.4E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MEKSSSSSSM QSKYTGVRKR KWGKWVAEIR IPNSRERIWL GSYDTPEKAA RAFDAALFCL  60
RGSSAKFNFP ENPPVISGGR NLSRSEIREA AAKFANEEEN VEREEEEVSY EESPSTSMDI  120
DSEFLSLLPT VGSGNFASDF GLFPGFGDFS DEYSGDRFRE QLSPTREDYY YHGDDGSMIL  180
WNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1611781280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00151DAPTransfer from AT1G19210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44061.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306071.13e-98ethylene-responsive transcription factor ERF017
SwissprotQ84QC21e-98ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A087HPK91e-130A0A087HPK9_ARAAL; Uncharacterized protein
STRINGA0A087HPK91e-131(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16142890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-89ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]