PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44084.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family MYB_related
Protein Properties Length: 95aa    MW: 11057.6 Da    PI: 9.8631
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44084.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.9e-07649344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT    +l+ +a + + ++   +W  +a+ +g  ++++++k ++
       KFK44084.1  6 SWTFKQNKLFERALAVYDKDtpdRWQNVAKAVG-SKSAEEVKRHY 49
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.005153IPR017877Myb-like domain
SMARTSM007171.1E-6355IPR001005SANT/Myb domain
SuperFamilySSF466898.54E-12560IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-4659IPR009057Homeodomain-like
PfamPF002491.7E-5649IPR001005SANT/Myb domain
CDDcd001676.10E-6649No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MSSSSSWTFK QNKLFERALA VYDKDTPDRW QNVAKAVGSK SAEEVKRHYD ILVEDLRNIE  60
QDLVPLPRYK TVDVGSKSRG INDFDLRLMK NLRIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-29295693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190341e-105AK119034.1 Arabidopsis thaliana At1g19510 mRNA for putative myb-related protein, complete cds, clone: RAFL21-36-F10.
GenBankAY5195241e-105AY519524.1 Arabidopsis thaliana MYB transcription factor (At1g19510) mRNA, complete cds.
GenBankBT0056571e-105BT005657.1 Arabidopsis thaliana clone U51233 putative myb family transcription factor (At1g19510) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010459622.11e-55PREDICTED: protein RADIALIS-like 5
RefseqXP_010498374.11e-55PREDICTED: protein RADIALIS-like 5
RefseqXP_020870089.11e-55protein RADIALIS-like 5
SwissprotQ8GW757e-56RADL5_ARATH; Protein RADIALIS-like 5
TrEMBLA0A087HPN22e-63A0A087HPN2_ARAAL; Uncharacterized protein
STRINGA0A087HPN23e-64(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19510.13e-58RAD-like 5