PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK44212.1

Common Name

SPL14

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

SBP

Protein Properties

Length: 1024aa MW: 113998 Da PI: 8.3549

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK44212.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.1e-40	128	205	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ k+yhrrhkvCevhska+++lv +++qrfCqqCsrfh l efDe+krsCrrrLa+hn+rrrk+++ KFK44212.1 128 MCQVDNCTEDLSHGKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNRRRRKTTQ 205 6**************************************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.7E-33	121	190	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.71	126	203	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.7E-36	127	204	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-28	129	202	IPR004333	Transcription factor, SBP-box
CDD	cd00204	8.50E-9	789	914	No hit	No description
SuperFamily	SSF48403	1.07E-7	809	916	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-7	818	923	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	8.879	861	933	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0042742	Biological Process	defense response to bacterium
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1024 aa Download sequence Send to blast
MEEVGAQVAT PIFIHQSLSP MGRKRDLYYH MSNRLVQTQQ PQRRDEWNST MWDWDSRRFQ 60 AKPVESDVLR LGNKTQFDLN ANNRKEVEEK GLDLNLGSCL NTVEDTKTTT IRPSKRVRSG 120 SPGGNYPMCQ VDNCTEDLSH GKDYHRRHKV CEVHSKATKA LVGKQMQRFC QQCSRFHLLA 180 EFDEGKRSCR RRLAGHNRRR RKTTQPEEIA SGAVVPGNNT SNANMDLMAL LTALACAQGK 240 NEVKPMGSPA VPDREKLLQI LSKINALPLP MDLVSKLNNI GSLARKNMDR PTVNPQNDMN 300 GASPSTMDLL AVLSATLGSS SPDALAMLSQ GGFGNKDNDK TKLSSYDHCA TTNLEKRTFV 360 GGERSSSSNQ SPSQEDSDSR AQDTRSSLSL QLFTSSPEDE SRPTVASSRK YYSSASSNPV 420 EDRSLSSSPV MQELFPLQTS PETMRSKNHK NTSHRTGCLP LELFGGSNRG VANPNFKGFG 480 QQSGYASSGS DYSPPSLNSD AQDRTGKIVF KLLDKDPSQL PGTLRTEIYN WLSNIPSEME 540 SYIRPGCVVL SVYVAMSPAA WEQLERNLMH RIGVLLQDSH SEFWKNARFI VNTGRQLASH 600 KNGKIRCSKS WRTWNSPELI SVSPVAVVAG EETSLVVRGR SLTNDGISFR STHMGSYVSM 660 EVTGAPCRQA VFEELNVNSF KVNNTQPGFL GRCFIEVENG FRGDSFPLII ANASICKELN 720 RLEEEFHPKS NDMTEEQAHR PTSREEVLCF LNELGWLFQK HQTSEPREQS DFSLYRFNFL 780 LVCSVERDYC AVISTVLDML VERNLVNDEL NRDALDMLDE IQLLNRAVKR KSTNMVELLI 840 HYSALGSSKK LVFLPNKTGP GGITPLHLAA CTSGSDDMVD LLTNDPQEIG LSSWNTLCDA 900 TGQTPYSYAA MRNNHTYNSL VARKLADKRN KQVSLNIEIV DQMGLSKRLS LEINKSSSCA 960 SCTTVALKYQ RRVSGSHRLF PTPIIHSMLA VATVCVCVCV FMHAFPIVRQ GSHFSWGGLD 1020 YGSI

Sequence ? help Back to Top

Protein Sequence Length: 1024 aa Download sequence Send to blast

MEEVGAQVAT PIFIHQSLSP MGRKRDLYYH MSNRLVQTQQ PQRRDEWNST MWDWDSRRFQ  60
AKPVESDVLR LGNKTQFDLN ANNRKEVEEK GLDLNLGSCL NTVEDTKTTT IRPSKRVRSG  120
SPGGNYPMCQ VDNCTEDLSH GKDYHRRHKV CEVHSKATKA LVGKQMQRFC QQCSRFHLLA  180
EFDEGKRSCR RRLAGHNRRR RKTTQPEEIA SGAVVPGNNT SNANMDLMAL LTALACAQGK  240
NEVKPMGSPA VPDREKLLQI LSKINALPLP MDLVSKLNNI GSLARKNMDR PTVNPQNDMN  300
GASPSTMDLL AVLSATLGSS SPDALAMLSQ GGFGNKDNDK TKLSSYDHCA TTNLEKRTFV  360
GGERSSSSNQ SPSQEDSDSR AQDTRSSLSL QLFTSSPEDE SRPTVASSRK YYSSASSNPV  420
EDRSLSSSPV MQELFPLQTS PETMRSKNHK NTSHRTGCLP LELFGGSNRG VANPNFKGFG  480
QQSGYASSGS DYSPPSLNSD AQDRTGKIVF KLLDKDPSQL PGTLRTEIYN WLSNIPSEME  540
SYIRPGCVVL SVYVAMSPAA WEQLERNLMH RIGVLLQDSH SEFWKNARFI VNTGRQLASH  600
KNGKIRCSKS WRTWNSPELI SVSPVAVVAG EETSLVVRGR SLTNDGISFR STHMGSYVSM  660
EVTGAPCRQA VFEELNVNSF KVNNTQPGFL GRCFIEVENG FRGDSFPLII ANASICKELN  720
RLEEEFHPKS NDMTEEQAHR PTSREEVLCF LNELGWLFQK HQTSEPREQS DFSLYRFNFL  780
LVCSVERDYC AVISTVLDML VERNLVNDEL NRDALDMLDE IQLLNRAVKR KSTNMVELLI  840
HYSALGSSKK LVFLPNKTGP GGITPLHLAA CTSGSDDMVD LLTNDPQEIG LSSWNTLCDA  900
TGQTPYSYAA MRNNHTYNSL VARKLADKRN KQVSLNIEIV DQMGLSKRLS LEINKSSSCA  960
SCTTVALKYQ RRVSGSHRLF PTPIIHSMLA VATVCVCVCV FMHAFPIVRQ GSHFSWGGLD  1020
YGSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	119	202	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269\|PubMed:15703061}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00155	DAP	Transfer from AT1G20980	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK44212.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353554	0.0	AK353554.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-I08.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006416342.1	0.0	squamosa promoter-binding-like protein 14
Swissprot	Q8RY95	0.0	SPL14_ARATH; Squamosa promoter-binding-like protein 14
TrEMBL	S4WY96	0.0	S4WY96_ARAAL; SQUAMOSA promoter binding protein-like protein 14
STRING	S4WY96	0.0	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3999	25	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Publications ? help Back to Top
Bergonzi S, et al. Mechanisms of age-dependent response to winter temperature in perennial flowering of Arabis alpina. Science, 2013. 340(6136): p. 1094-7 [PMID:23723236] Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Liu J, et al. Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.). Front Plant Sci, 2016. 7: p. 21 [PMID:26870051]