PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44310.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 237aa    MW: 26066.2 Da    PI: 8.7674
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44310.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.8e-214796255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  KFK44310.1 47 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 96
                59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.02E-3646106No hitNo description
SuperFamilySSF541712.09E-2347105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-3347105IPR001471AP2/ERF domain
SMARTSM003806.9E-4047110IPR001471AP2/ERF domain
PROSITE profilePS5103223.59147104IPR001471AP2/ERF domain
PfamPF008478.5E-154896IPR001471AP2/ERF domain
PRINTSPR003671.8E-114859IPR001471AP2/ERF domain
PRINTSPR003671.8E-117086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MEALLPFIKS SSGSDLHQIG SSRFTNLLTP KPIPMKQSGS APKPTKLYRG VRQRHWGKWV  60
AEIRLPRNRT RLWLGTFDTA EEAALAYDKA AFKLRGDSAR LNFPNLRHNI GEYHPLQSSV  120
DAKLEAICQN LAQTQKQGKS TKKKTKRAAK QSEVNPCSDL KPEDCSSAGS GGSSPTLTES  180
YGSGGSSPPL TESYGSSPLS DLTFGEAEEE QTPWNENFAL EKYPSYEIDW EAILASS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2246112470ATERF1
3gcc_A5e-2246112470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0508256e-84AY050825.1 Arabidopsis thaliana At1g22190 mRNA sequence.
GenBankBT0009076e-84BT000907.1 Arabidopsis thaliana clone C105186 putative AP2 domain containing protein RAP2 (At1g22190) mRNA, complete cds.
GenBankCP0026846e-84CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF16L16e-84AC073942.2 Sequence of BAC F16L1 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416222.11e-108ethylene-responsive transcription factor RAP2-13
SwissprotQ9LM154e-90RA213_ARATH; Ethylene-responsive transcription factor RAP2-13
TrEMBLA0A087HQA81e-174A0A087HQA8_ARAAL; Uncharacterized protein
STRINGA0A087HQA81e-175(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-76ERF family protein
Publications ? help Back to Top
  1. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  2. Rudnik R,Bulcha JT,Reifschneider E,Ellersiek U,Baier M
    Specificity versus redundancy in the RAP2.4 transcription factor family of Arabidopsis thaliana: transcriptional regulation of genes for chloroplast peroxidases.
    BMC Plant Biol., 2017. 17(1): p. 144
    [PMID:28835225]