PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44385.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 167aa    MW: 18423.9 Da    PI: 10.3317
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44385.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.3e-2079137155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng..kr..krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++++GVr+++ +g+W+AeIr+ +  +g  k    r++lg+f taeeAa a+++a+ +l g
  KFK44385.1  79 KKFRGVRQRP-WGKWAAEIRCGKAhGGdrKGrpNRIWLGTFETAEEAALAYDNAAIQLIG 137
                 59********.**********777566963379**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381233.3E-371167IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000185.00E-2579144No hitNo description
SuperFamilySSF541711.05E-1880145IPR016177DNA-binding domain
PfamPF008471.5E-1380137IPR001471AP2/ERF domain
PROSITE profilePS5103221.25980145IPR001471AP2/ERF domain
SMARTSM003809.2E-3080151IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-2780144IPR001471AP2/ERF domain
PRINTSPR003671.4E-118192IPR001471AP2/ERF domain
PRINTSPR003671.4E-11111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MKRIVRISFT DMEATDSSSS EDESKITKSP NSRRRGKKFV KEIVIDNSDS AGDLDVSKTR  60
FKIRIPARVL APTTTEKKKK FRGVRQRPWG KWAAEIRCGK AHGGDRKGRP NRIWLGTFET  120
AEEAALAYDN AAIQLIGPDA PTNFGIPAVE STVAKKDSDA CASVEDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-1877144262ATERF1
3gcc_A8e-1877144262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44385.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006416134.12e-86ethylene-responsive transcription factor ERF069
SwissprotQ8W4I54e-67ERF69_ARATH; Ethylene-responsive transcription factor ERF069
SwissprotQ9C9955e-67ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBLA0A087HQI31e-117A0A087HQI3_ARAAL; Uncharacterized protein
STRINGA0A087HQI31e-118(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40002359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22985.17e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]