PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44387.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family GATA
Protein Properties Length: 193aa    MW: 22225.2 Da    PI: 9.9015
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44387.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.71.3e-17119153135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++C t +TplWR+gp g  tLCnaCG++yr+ +l
  KFK44387.1 119 CTHCETRSTPLWREGPKGAGTLCNACGMRYRSGRL 153
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.848113149IPR000679Zinc finger, GATA-type
SMARTSM004018.7E-15113167IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-14116175No hitNo description
Gene3DG3DSA:3.30.50.105.2E-15117150IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.38E-15118167No hitNo description
PfamPF003201.7E-15119153IPR000679Zinc finger, GATA-type
PROSITE patternPS003440119144IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVHQHHEDVV VQEEEEDIGT AMQKLQIPFK ELEQLPIDSV YDFADGVRDI IDDYNLLLED  60
FNPSNNNNSI DVLKNSKPLQ KSSRICFRSP PKRSRNKRLR RKRQCFKSAV SLFDSKKSCT  120
HCETRSTPLW REGPKGAGTL CNACGMRYRS GRLLPEYRPA SSPGFKPNVH SNFHRKVMKI  180
RSERSSPPNS FGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19297RSRNKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00391DAPTransfer from AT3G45170Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44387.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503167.17e-78PREDICTED: GATA transcription factor 14-like
SwissprotQ9M1U22e-74GAT14_ARATH; GATA transcription factor 14
TrEMBLA0A087HQI51e-142A0A087HQI5_ARAAL; Uncharacterized protein
STRINGA0A087HQI51e-142(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM163681113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.11e-64GATA transcription factor 14