PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44536.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C2H2
Protein Properties Length: 376aa    MW: 42953.9 Da    PI: 8.7509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44536.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.1e-065577123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C++C++ F r  nL+ H r+H
  KFK44536.1 55 YICEICNQGFQRDQNLQMHRRRH 77
                89********************9 PP
2zf-C2H214.88.4e-05134156123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C+ C+k +  +s++k H++t+
  KFK44536.1 134 WVCERCSKGYAVQSDYKAHLKTC 156
                 58*******************98 PP
3zf-C2H211.20.0011164182523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsr +++  H+ t+
  KFK44536.1 164 DCGRVFSRVESFIEHQDTC 182
                 9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.16E-55278No hitNo description
Gene3DG3DSA:3.30.160.601.6E-55577IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8665577IPR007087Zinc finger, C2H2
PfamPF128740.0195573No hitNo description
SMARTSM003550.00655577IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
SMARTSM0035516098128IPR015880Zinc finger, C2H2-like
SMARTSM0035594134161IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MMDYEKNHNL PSDLLLGING ATTTNKRKRR PAGTPDPDAE VVSLSPRTLL ESDQYICEIC  60
NQGFQRDQNL QMHRRRHKVP WKLLKREKKD EEVRKRVYVC PEPTCLHHDP CHALGDLVGI  120
KKHFRRKHSV HKQWVCERCS KGYAVQSDYK AHLKTCGSRG HSCDCGRVFS RVESFIEHQD  180
TCKIRRPPST EHHPQQQTAS PAIPWRTTST TTIGPLLHGH PLLRPPQPFN KNSLALAYPL  240
RASSTPFESL ELQLSIGMAR ASEQAKRNET GETLTKERAN AEARMADEMR QEAKRQIEMA  300
EMDFEKAKRI RKDAKAELEK AHAVREEAIK RIDATMLEIT CHSCKQLFQL PVMADESTSS  360
HVMSYVSSAM TEGECE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-17132182555Zinc finger protein JACKDAW
5b3h_F5e-17132182555Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor regulating lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD14 in directing leaf and floral organ morphogenesis (PubMed:24039602). Acts cooperatively with IDD15 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:24039602}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44536.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024008661.10.0protein indeterminate-domain 16
SwissprotQ9FRH40.0IDD16_ARATH; Protein indeterminate-domain 16
TrEMBLA0A087HQY40.0A0A087HQY4_ARAAL; Uncharacterized protein
STRINGA0A087HQY40.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25250.10.0indeterminate(ID)-domain 16
Publications ? help Back to Top
  1. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]