PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44579.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family B3
Protein Properties Length: 536aa    MW: 60247.3 Da    PI: 9.3469
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44579.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.71.2e-1423981294
                HTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3 12 ksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 ++ l +p  f+++h +g k ++k  +l +  s ++W vk+  ++ +    lt+GW+eF+ a++L++gD+ vF+++g++ f  +v
  KFK44579.1 23 HTH-LNIPVAFFSKHvQGRKDQNKVAKLISdASDKTWLVKV--DGLK----LTDGWEEFAVAHDLRVGDITVFRHEGEMVF--HV 98
                444.99**********667777777777765999*******..6666....***********************8887666..43 PP
2B367.81.5e-21153245599
                 -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
          B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++ ++l++++l+lp +fa+++g++k ++++++l +e+g sW+++l+y+k + +++ + GW++F+ ang+  g   +Fkl++ +++ +v++++r+
  KFK44579.1 153 KVSVSSLRNDQLYLPLNFARRNGLNKMSGQKIVLVNEEGGSWNFTLKYNKADMHTYVKPGWRRFCAANGMSHGHY-TFKLVR-KSGPPVIRLCRA 245
                 457889999****************************************************************96.***998.9999******97 PP
3B359.27.4e-19266353695
                 ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 ++ ++lk++ l+l ++f++++g++k + +++ l++e+gr+W+++l++  + + ++++ GWk F++ ng+k+gD++ Fkl+g +++++ ++
  KFK44579.1 266 VTLSSLKRDKLYLGRNFVNANGLDKGC-REIDLKNEWGRRWTLTLNHYESINYTTIGPGWKTFCQVNGIKAGDSFKFKLVG-TGEKPILS 353
                 678999******************977.6****************8888888899************************99.55556655 PP
4B353.73.8e-17431531198
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 f++ ++++++ ++  l lp  f + +g++k++  ++tl  ++g +W v l       +k+sg + l+kGW++F+ a+gLk gD++v++l +++e+++v+
  KFK44579.1 431 FVTLTLTPYAVTKYKLFLPMGFSRVNGINKPG--KITLLGQDGVKWVVDLLQhkrsgCKRSGVMRLGKGWRDFCGAQGLKLGDSFVLELFWEDEASPVL 527
                 667777888889989************99766..7***************5556656666666*****************************9999*** PP

                 EEE- CS
          B3  95 kvfr 98 
                 k++ 
  KFK44579.1 528 KFCA 531
                 9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-207106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-189110IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.19411104IPR003340B3 DNA binding domain
CDDcd100171.51E-141299No hitNo description
SMARTSM010194.2E-1914104IPR003340B3 DNA binding domain
PfamPF023623.0E-92597IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-16143243IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-16145245IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.816149246IPR003340B3 DNA binding domain
CDDcd100175.51E-14149244No hitNo description
SMARTSM010194.3E-26150246IPR003340B3 DNA binding domain
PfamPF023629.0E-20152245IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15254352IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-15259359IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.93261357IPR003340B3 DNA binding domain
SMARTSM010191.5E-19262358IPR003340B3 DNA binding domain
PfamPF023623.5E-17266354IPR003340B3 DNA binding domain
CDDcd100173.84E-15271356No hitNo description
Gene3DG3DSA:2.40.330.101.1E-18423532IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-20427531IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-14430521No hitNo description
PfamPF023626.9E-17431531IPR003340B3 DNA binding domain
SMARTSM010194.7E-22431533IPR003340B3 DNA binding domain
PROSITE profilePS5086314.057431532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEGRSLYSPI NPHFFQPLLP GFHTHLNIPV AFFSKHVQGR KDQNKVAKLI SDASDKTWLV  60
KVDGLKLTDG WEEFAVAHDL RVGDITVFRH EGEMVFHVTS LGPSCCEILY TSSPSEESDD  120
QTNIASGLSS TVMKKSRRNK LNFSSNHSRF VTKVSVSSLR NDQLYLPLNF ARRNGLNKMS  180
GQKIVLVNEE GGSWNFTLKY NKADMHTYVK PGWRRFCAAN GMSHGHYTFK LVRKSGPPVI  240
RLCRAEHRPQ AESTSSTHYS FYVGSVTLSS LKRDKLYLGR NFVNANGLDK GCREIDLKNE  300
WGRRWTLTLN HYESINYTTI GPGWKTFCQV NGIKAGDSFK FKLVGTGEKP ILSLYPTDSN  360
RDKTPLESPE DSDDVISLSS NTSSRDDSSE SQGSEWESLG DESISQECLE MEKEKCSARC  420
RASSSYSQNR FVTLTLTPYA VTKYKLFLPM GFSRVNGINK PGKITLLGQD GVKWVVDLLQ  480
HKRSGCKRSG VMRLGKGWRD FCGAQGLKLG DSFVLELFWE DEASPVLKFC AKLNSV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44579.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639399.10.0PREDICTED: B3 domain-containing protein REM17-like
SwissprotQ84WP31e-166REM17_ARATH; B3 domain-containing protein REM17
TrEMBLA0A087HR270.0A0A087HR27_ARAAL; Uncharacterized protein
STRINGA0A087HR270.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57811648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26680.11e-164B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]