PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44605.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 255aa    MW: 29527.8 Da    PI: 5.6333
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44605.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.24.9e-1767120356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ eql+ Le+ Fe  +++  +++ eLA+ lgL+ rq+ +WFqNrRa+ k
  KFK44605.1  67 KKRRLNMEQLKSLEKNFELGNKLESDRKLELARTLGLQPRQIAIWFQNRRARSK 120
                 456899**********************************************99 PP
2HD-ZIP_I/II121.93.1e-3966158193
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  ekkrrl+ eq+k+LE++Fe  +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy++Lkr++d+lk+ ne L++++++L++++++
   KFK44605.1  66 EKKRRLNMEQLKSLEKNFELGNKLESDRKLELARTLGLQPRQIAIWFQNRRARSKTKQLERDYDTLKRQFDSLKDANEILQTQNQKLQAQVMA 158
                  69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.26E-1855124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-1760122IPR009057Homeodomain-like
PROSITE profilePS5007117.11962122IPR001356Homeobox domain
SMARTSM003892.5E-1665126IPR001356Homeobox domain
CDDcd000866.08E-1467123No hitNo description
PfamPF000461.9E-1467120IPR001356Homeobox domain
PRINTSPR000314.5E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000314.5E-6102118IPR000047Helix-turn-helix motif
PfamPF021831.8E-15122162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MSCNNGLAFF PANFSLQNHH QEEEEDHHQD FHGFLGKRSP ITMQGFCNLE INGEEEFLDD  60
GSKMGEKKRR LNMEQLKSLE KNFELGNKLE SDRKLELART LGLQPRQIAI WFQNRRARSK  120
TKQLERDYDT LKRQFDSLKD ANEILQTQNQ KLQAQVMALK SREAIESINL NKETEDSCSN  180
KSENISGDMR PPGMDGQFTG SHHPPSSPTT TTMQFFQNSS SEQRMVKEEN SISNMFCGID  240
DQSGFWPWLD QQHYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARSKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44605.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415983.11e-161homeobox-leucine zipper protein ATHB-23
SwissprotQ8LFD31e-154ATB23_ARATH; Homeobox-leucine zipper protein ATHB-23
TrEMBLA0A087HR530.0A0A087HR53_ARAAL; Uncharacterized protein
STRINGA0A087HR530.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-142homeobox protein 23
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]