PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44643.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 162aa    MW: 17839.2 Da    PI: 9.9967
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44643.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2544.2e-173887255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+G+r +k +g+WvAeIr+p   +kr r +lg++ ta  Aa+a++ a  +l+g
  KFK44643.1 38 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYTTAVAAARAYDTAVFYLRG 87
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-213896IPR016177DNA-binding domain
SMARTSM003802.9E-3738101IPR001471AP2/ERF domain
PROSITE profilePS5103222.3393895IPR001471AP2/ERF domain
PRINTSPR003677.3E-123950IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-303996IPR001471AP2/ERF domain
PfamPF008473.3E-103987IPR001471AP2/ERF domain
CDDcd000184.65E-263997No hitNo description
PRINTSPR003677.3E-127797IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGERHDSTT SSSRKRSHEP AEERPASHVA TMAFKEKPYR GIRMRKWGKW VAEIREPNKR  60
SRLWLGSYTT AVAAARAYDT AVFYLRGPSA RLNFPDLLVQ EGDRRSAAAA DMPAALIREK  120
AAEVGARVDA LLASADPAAH SSSLPVLVEK PDLNKIPESG DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1635103270ATERF1
3gcc_A3e-1635103270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00188DAPTransfer from AT1G46768Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44643.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001322276.15e-72related to AP2 1
RefseqNP_564496.15e-72related to AP2 1
SwissprotQ8LC304e-73RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A087HR911e-113A0A087HR91_ARAAL; Uncharacterized protein
STRINGA0A087HR911e-113(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.13e-57related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]