PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44692.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family Dof
Protein Properties Length: 297aa    MW: 32356.7 Da    PI: 9.9238
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44692.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.72.6e-382383262
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                ++ +lkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGg+ rknk+++
  KFK44692.1 23 PQPQLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGSYRKNKRVK 83
                67899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.1E-332681IPR003851Zinc finger, Dof-type
ProDomPD0074784.0E-272781IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9012781IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102965IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MQSKNMIIAS SHQQQQPQQP QQPQPQLKCP RCDSSNTKFC YYNNYSLSQP RHFCKACKRY  60
WTRGGTLRNV PVGGSYRKNK RVKRPATTTT ASTASTTTSS SPNNSHQISH FSSMNHHPLF  120
YGLSDQVNNL PMIPSRFSDS SKTSSTSGLE SEFFSSAGFN GLSALGLGLP HHMSHHDHSF  180
INNSTTNKPF LLSGLFGSSV STSSSTLLQH SHKPMNNGSQ MLGQSHLQTL ASLQDLHVGG  240
NNDGINKEGN TNGFMSSSSS SLDPSNYNNI WNNASLVNGA WLDPTNNNVG SSLTSLI
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44692.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934820.0AB493482.1 Arabidopsis thaliana At1g28310 mRNA for hypothetical protein, partial cds, clone: RAAt1g28310.
GenBankAC0210440.0AC021044.5 Arabidopsis thaliana chromosome I BAC F3H9 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593055.11e-148PREDICTED: dof zinc finger protein DOF1.4-like
RefseqXP_013692400.11e-148dof zinc finger protein DOF1.4-like isoform X1
RefseqXP_013692401.11e-148dof zinc finger protein DOF1.4-like isoform X1
SwissprotQ9FZA41e-138DOF14_ARATH; Dof zinc finger protein DOF1.4
TrEMBLA0A087HRE10.0A0A087HRE1_ARAAL; Uncharacterized protein
STRINGA0A087HRE10.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28310.11e-117Dof family protein