PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44706.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 182aa    MW: 19887.5 Da    PI: 10.3121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44706.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-191261255
         AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a++ l+g
  KFK44706.1 12 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARFLRG 61
                6********.**********883....5***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.4051269IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-311269IPR001471AP2/ERF domain
SMARTSM003803.0E-341275IPR001471AP2/ERF domain
PfamPF008473.0E-131261IPR001471AP2/ERF domain
CDDcd000187.08E-291269No hitNo description
SuperFamilySSF541714.58E-221270IPR016177DNA-binding domain
PRINTSPR003675.4E-111324IPR001471AP2/ERF domain
PRINTSPR003675.4E-113551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MASTTTCARE VHYRGVRKRP WGRYAAEIRD PWKKTRVWLG TFDTPEEAAL AYDGAARFLR  60
GIKAKTNFPS PLSLDLNHIP SAAAGGNQQQ HHQHMWFSAA PPLPPPVHNN HRIFLRTGVL  120
NDKTSTEAPL YFTALPASDT SAHGGGGGRV FGFPMMSSSS TSSATVTRGL AIDLNEPPPL  180
WL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-21869163ATERF1
3gcc_A8e-21869163ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44706.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0558832e-86AB055883.1 Arabidopsis thaliana AtERF12 gene for ERF domain protein12, complete cds.
GenBankAC0101552e-86AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankAY0997982e-86AY099798.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankBT0026042e-86BT002604.1 Arabidopsis thaliana ethylene responsive element binding factor, putative (At1g28360) mRNA, complete cds.
GenBankCP0026842e-86CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306124.13e-86ethylene-responsive transcription factor 12
SwissprotQ94ID67e-85ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A087HRF41e-132A0A087HRF4_ARAAL; Uncharacterized protein
STRINGA0A087HRF41e-132(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-80ERF domain protein 12