PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44860.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family HD-ZIP
Protein Properties Length: 837aa    MW: 91971.2 Da    PI: 6.4592
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44860.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-182078357
                --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
    Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                k  ++t+eq+e+Le++++++++p+  +r++L +++    +++ rq+kvWFqNrR +ek+
  KFK44860.1 20 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRECpilcNIEPRQIKVWFQNRRCREKQ 78
                5678*****************************************************97 PP
2START1749.1e-551693772205
                 HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS
       START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 
                 +aee+++e++ ka+ ++  Wv+   +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++++etl vi +g  g+++l ++++
  KFK44860.1 169 IAEETLAEFLCKATGTAIDWVQIIGMKPGPDSIGIVAVSRNCSGIAARACGLVGLEPM-KVAEILKDRPSWFRDCRSVETLSVIPTGngGTIELVNTQM 266
                 7899******************************************************.8888888888****************************** PP

                 TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS
       START  99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193
                 +a+++l+p Rdf+++Ry+ +l++g++v++++S++  +  p+   s+++vRa++l Sg+li+p+++g+s + +v+hvdl++++++++lr+l++s+ + ++
  KFK44860.1 267 YAPTTLAPaRDFWTLRYSTCLEDGSYVVCERSLTFATGGPNtplSPNFVRAKMLSSGFLIRPCDGGGSIINIVDHVDLDASSVPEVLRPLYESSKILAQ 365
                 **************************************99999******************************************************** PP

                 HHHHHHTXXXXX CS
       START 194 ktwvatlqrqce 205
                 kt+va+l++ ++
  KFK44860.1 366 KTTVAALRHVRQ 377
                 *******98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-19478IPR009057Homeodomain-like
PROSITE profilePS5007115.4351579IPR001356Homeobox domain
SMARTSM003895.9E-161783IPR001356Homeobox domain
SuperFamilySSF466892.1E-161981IPR009057Homeodomain-like
CDDcd000867.09E-172080No hitNo description
PfamPF000464.2E-162178IPR001356Homeobox domain
CDDcd146863.20E-672111No hitNo description
PROSITE profilePS5084826.049159387IPR002913START domain
CDDcd088757.61E-71163378No hitNo description
SMARTSM002342.1E-49168378IPR002913START domain
SuperFamilySSF559613.57E-35168379No hitNo description
PfamPF018521.8E-52169377IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-19205373IPR023393START-like domain
SuperFamilySSF559612.61E-5416497No hitNo description
SuperFamilySSF559612.61E-5529604No hitNo description
PfamPF086706.5E-49693836IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009880Biological Processembryonic pattern specification
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MMAHSMDDRD SPDKGFDSGK YVRYTPEQVE ALERVYAECP KPTSLRRQQL IRECPILCNI  60
EPRQIKVWFQ NRRCREKQRK ESARLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGFM  120
KNRIHTASGT TTDNSCESVV VSGQQRQQQN PTHQHPQRDA NNPAGLLSIA EETLAEFLCK  180
ATGTAIDWVQ IIGMKPGPDS IGIVAVSRNC SGIAARACGL VGLEPMKVAE ILKDRPSWFR  240
DCRSVETLSV IPTGNGGTIE LVNTQMYAPT TLAPARDFWT LRYSTCLEDG SYVVCERSLT  300
FATGGPNTPL SPNFVRAKML SSGFLIRPCD GGGSIINIVD HVDLDASSVP EVLRPLYESS  360
KILAQKTTVA ALRHVRQISQ EASGEVQYTG GRQPAVLRTF SQRLCRGFND AVNGFADDGW  420
TSMSSDGGED ISIMINSSSA KFAGSQYSNS FLPSFGSGVL CAKASMLLQN VPPLVLIRFL  480
REHRAEWADY GVDAYAAASL RATPFTVPCV RSGGFPSNQV IVPLAQTLEH EEDLEVVKLG  540
SHAYSPEDMG LSRDMYLLQV CSGVDENAVG GCAQLVFAPI DESFADDAPL LPSGFRVIPL  600
EHKTTPNDHL SANRTRDLAS SLDGSTKTDS DTNFRLVLTI AFQFTFDNHS RDNVATMARQ  660
YVRNVVGSIQ RVALAITPRP GSMQLPSSPE ALTLVRWISR SYSMHTGANL FGADSDGDTL  720
LKNLWNHTDA ILCCSINTHT SPVFTFANQA GLDMLETTLV ALQDIMLDKT LDGSARKTLC  780
SEFSKITQQG YATLPAGICV SSMGRPVSYE QATVWKVLDN NESNHCLAFI LVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. Binds to the DNA sequence 5'-GTAAT[GC]ATTAC-3'. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:17900520, ECO:0000269|PubMed:9747806}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00170DAPTransfer from AT1G30490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44860.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532580.0AK353258.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-39-H09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013662459.10.0homeobox-leucine zipper protein ATHB-9
SwissprotO042920.0ATBH9_ARATH; Homeobox-leucine zipper protein ATHB-9
TrEMBLA0A087HRV80.0A0A087HRV8_ARAAL; Uncharacterized protein
STRINGA0A087HRV80.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30490.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  3. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]