PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK44992.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 238aa    MW: 28256.1 Da    PI: 4.1682
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK44992.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.46.5e-24678172
         NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgk 72
                lppGfrFhPtdeelv++yL+++ e+ ++el ++i+++++y+++Pw+Lp+   + +++ ew+fF++rd+ky++g+
  KFK44992.1  6 LPPGFRFHPTDEELVSYYLHRRNEKLEIEL-NIIPSIELYNYDPWELPErsFLPNRDMEWFFFCQRDRKYQNGR 78
                79****************************.89**************94345566888*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.15E-354118IPR003441NAC domain
PROSITE profilePS5100522.4236151IPR003441NAC domain
PfamPF023651.7E-12794IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAGSSLPPGF RFHPTDEELV SYYLHRRNEK LEIELNIIPS IELYNYDPWE LPERSFLPNR  60
DMEWFFFCQR DRKYQNGRAP FGGRTEWVMH EYRLCDNDSS QGSLNFKGDF ALCRVLKRND  120
LTLKKCETNS PEVLNEPLRN RTEISCQESY QENVSSDTSN NTLWTSPDII LESSFQENSQ  180
PQTEQDSGFQ EFALPEFEYP QEFFADLNFD WEMESPFMFD NYPEAHMNNE VMNYQVFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-26511819168NAC domain-containing protein 19
3swm_B4e-26511819168NAC domain-containing protein 19
3swm_C4e-26511819168NAC domain-containing protein 19
3swm_D4e-26511819168NAC domain-containing protein 19
3swp_A4e-26511819168NAC domain-containing protein 19
3swp_B4e-26511819168NAC domain-containing protein 19
3swp_C4e-26511819168NAC domain-containing protein 19
3swp_D4e-26511819168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00175DAPTransfer from AT1G32510Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK44992.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415183.11e-126NAC domain-containing protein 71
SwissprotQ9LS243e-59NAC96_ARATH; NAC domain-containing protein 96
TrEMBLA0A087HS901e-176A0A087HS90_ARAAL; Uncharacterized protein
STRINGA0A087HS901e-177(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150291719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.11e-120NAC domain containing protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]