PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK45012.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family C3H
Protein Properties Length: 365aa    MW: 39194.4 Da    PI: 7.7919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK45012.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0985108125
                 --S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                 +kt+lC+ f++ GtC+y  +C+FaH
  KFK45012.1  85 FKTKLCCKFRA-GTCPYVTNCNFAH 108
                 69*********.************* PP
2zf-CCCH42.79.5e-14241266126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  KFK45012.1 241 WKTRICNKWEITGYCPFGAKCHFAHG 266
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.05E-782115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1382117IPR000571Zinc finger, CCCH-type
SMARTSM003560.003984110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.67184111IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-785108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-7155182IPR000571Zinc finger, CCCH-type
SMARTSM003560.47155182IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.244155183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-8156182IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-17236270IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-10237271IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-9240267IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178240268IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-11241266IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MSHHHHHRRD SGGDVVHVIP TNNPPPENWF PNLNDSSVWA TEDDYNRVDA LNHDAEGPPN  60
KKSRLSPSSS SAASNRTKAI GKMFFKTKLC CKFRAGTCPY VTNCNFAHTV EELRRPPANW  120
QEIVAAHEEE RTPEPREEFQ IPSLVSSVTE SGGRSFKGRH CKKFYTEEGC PYGESCTFLH  180
DEASRNRESV AISLGPGGYG GGSGGGSNVV VLGGGGGSNV VVLGGGGGSG NGANILKPSN  240
WKTRICNKWE ITGYCPFGAK CHFAHGAAEL HRFGGGLVEE GEGKDGVSPN PDIKQTGTTP  300
KGLSDATPII SPGVPHHTDS SYQSGVALQR ASSAVTQKPG IRTHQKWKGP AKISRIYGDW  360
IDDIE
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK45012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478659.10.0PREDICTED: zinc finger CCCH domain-containing protein 12-like
SwissprotQ9LQM30.0C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A087HSB00.0A0A087HSB0_ARAAL; Uncharacterized protein
STRINGA0A087HSB00.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40032758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-169C3H family protein