PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KFK45025.1

Organism

Arabis alpina

Taxonomic ID

50452

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis

Family

NAC

Protein Properties

Length: 338aa MW: 38926.4 Da PI: 5.9324

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KFK45025.1	genome	MPIPBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.9	2.8e-51	16	144	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPt+eel+++yL+kkv+++k++l +vi+evd++k+ePwd+++ ++ + +++wyfFs++dkky+tg+r+nrat +g+Wkatg+dk ++s KFK45025.1 16 VPPGFRFHPTEEELLHYYLRKKVNSQKIDL-DVIREVDLNKLEPWDIQEecRIGStPQNDWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKIIYS-C 112 69**************************.9***********963433332456*********************************9.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 + +gl+ktLvfykgrap+g+k+dW+mheyrl KFK45025.1 113 VRRIGLRKTLVFYKGRAPHGQKSDWIMHEYRL 144 999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-57	12	177	IPR003441	NAC domain
PROSITE profile	PS51005	55.678	16	177	IPR003441	NAC domain
Pfam	PF02365	6.2E-27	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009809	Biological Process	lignin biosynthetic process
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0010047	Biological Process	fruit dehiscence
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MAENKVNLSI NGQSKVPPGF RFHPTEEELL HYYLRKKVNS QKIDLDVIRE VDLNKLEPWD 60 IQEECRIGST PQNDWYFFSH KDKKYPTGTR TNRATVAGFW KATGRDKIIY SCVRRIGLRK 120 TLVFYKGRAP HGQKSDWIMH EYRLDDTPAS NGSSDVASED PMSYNEDGWV VCRVFRKKNY 180 QKIDDCPKIT ISSSPDDTEQ ERTTFHNTQN DTGLDHILLY MDRTSSSNFC NPESQTLPTI 240 NIQHQHDLLF MQLPRLEETP PKSENPVQEK ITGKPVCSNW GSLDRLVAWQ LNNGHHRMAD 300 TCDCPSFDEE EENGDNIDLW SSFTASPSSL DPLVHLSV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-49	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-49	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-49	13	179	14	167	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-49	13	179	14	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-49	13	179	17	170	NAC domain-containing protein 19
3swm_B	7e-49	13	179	17	170	NAC domain-containing protein 19
3swm_C	7e-49	13	179	17	170	NAC domain-containing protein 19
3swm_D	7e-49	13	179	17	170	NAC domain-containing protein 19
3swp_A	7e-49	13	179	17	170	NAC domain-containing protein 19
3swp_B	7e-49	13	179	17	170	NAC domain-containing protein 19
3swp_C	7e-49	13	179	17	170	NAC domain-containing protein 19
3swp_D	7e-49	13	179	17	170	NAC domain-containing protein 19
4dul_A	8e-49	13	179	14	167	NAC domain-containing protein 19
4dul_B	8e-49	13	179	14	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of genes involved in biosynthesis of secondary walls. Together with NST1, required for the secondary cell wall thickening and lignification of sclerenchymatous fibers and secondary xylem vessels (tracheary elements). Seems to repress the secondary cell wall thickening of xylary fibers. May also regulate the secondary cell wall lignification of other tissues. Binds to and activates the promoter of MYB46. {ECO:0000269\|PubMed:17114348, ECO:0000269\|PubMed:17237351, ECO:0000269\|PubMed:17333250, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:17890373}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00016	PBM	Transfer from AT1G32770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KFK45025.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF101892	0.0	EF101892.1 Arabidopsis thaliana SND1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_174554.1	0.0	NAC domain containing protein 12
Swissprot	Q9LPI7	0.0	NAC12_ARATH; NAC domain-containing protein 12
TrEMBL	A0A087HSC3	0.0	A0A087HSC3_ARAAL; Uncharacterized protein
STRING	A0A087HSC4	0.0	(Arabis alpina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32770.1	0.0	NAC domain containing protein 12

Publications ? help Back to Top
Zhao Q, et al. Pinoresinol reductase 1 impacts lignin distribution during secondary cell wall biosynthesis in Arabidopsis. Phytochemistry, 2015. 112: p. 170-8 [PMID:25107662] Fernández-Pérez F,Vivar T,Pomar F,Pedreño MA,Novo-Uzal E Peroxidase 4 is involved in syringyl lignin formation in Arabidopsis thaliana. J. Plant Physiol., 2015. 175: p. 86-94 [PMID:25506770] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Yuan Y,Teng Q,Zhong R,Ye ZH TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan. Plant Cell Physiol., 2016. 57(1): p. 35-45 [PMID:26556650] Huang J,Chen F,Wu S,Li J,Xu W Cotton GhMYB7 is predominantly expressed in developing fibers and regulates secondary cell wall biosynthesis in transgenic Arabidopsis. Sci China Life Sci, 2016. 59(2): p. 194-205 [PMID:26803299] Pascual MB, et al. PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine. Plant Biotechnol. J., 2018. 16(5): p. 1094-1104 [PMID:29055073]