PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK45049.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 649aa    MW: 73738.1 Da    PI: 6.4393
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK45049.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.79.7e-53111381128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp GfrF+Ptdeel+++yL+ k++g++ e+ +vi+e+d++k+ePwdLp  + +k+++ ew+fF++rd+ky++g+r+nrat+ gyWkatgkd++++s k+
  KFK45049.1  11 LPLGFRFRPTDEELINHYLRLKINGRDSEV-RVIPEIDVCKWEPWDLPglSVIKTDDPEWFFFCPRDRKYPSGHRSNRATDIGYWKATGKDRTIKS-KK 107
                 699************************999.99***************6447888899**************************************.99 PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                   +g+kktLvfy+grap+ge+t+W+mheyr+
  KFK45049.1 108 MIIGMKKTLVFYRGRAPRGERTNWIMHEYRA 138
                 99***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-634161IPR003441NAC domain
PROSITE profilePS5100558.34211161IPR003441NAC domain
PfamPF023651.5E-2712137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MTTETLSMET LPLGFRFRPT DEELINHYLR LKINGRDSEV RVIPEIDVCK WEPWDLPGLS  60
VIKTDDPEWF FFCPRDRKYP SGHRSNRATD IGYWKATGKD RTIKSKKMII GMKKTLVFYR  120
GRAPRGERTN WIMHEYRATD NDLDGTGPGQ NPYVLCRLFH KPSDNCDEIE NVTSTPNTAR  180
CSPDDTSSEM VQETATSCVH TLKKSDDTER CSSDKGSDVK PYDPVVNNTS VNHAGTSCVK  240
DCVFGKTLVE ENPLVKDSAA FYGPSSTHTS EKAYYPTQSS FGFPGSHMDM YSSDFGNCDH  300
GLHFQDGAAV QDASLTDVLD EVLHNHNESS SEGKDFAFPN MMHWPGNTRL LSTEYPFAQD  360
GSAEIAGSQF VPSILASRWV SEHLVDNKEM VEMQSSSGSS RTLTPNHSNV LGQYASTSYA  420
TIDPFNYNNN QPEQSSFEQS PADRKISPGD ISEFEARSQE NQTDLDFIVD QGTAPRRIRL  480
HIEHPFTPDN KKKERPADIK KKERSADNHE EDEVQSTMSK VIKESERYFL DRDKTIVQGH  540
ESLLESANLR TQGTAQRRIR LQTRYQKPRI TLNNTGRDSR HSKEREEEVS SSSSQKHGKL  600
MRRRSFVQCS SMVLIMAMIV VLVGMWKESR DVKCSFMFHQ FDSFKGMFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-4631639167NO APICAL MERISTEM PROTEIN
1ut4_B3e-4631639167NO APICAL MERISTEM PROTEIN
1ut7_A3e-4631639167NO APICAL MERISTEM PROTEIN
1ut7_B3e-4631639167NO APICAL MERISTEM PROTEIN
3swm_A4e-46316312170NAC domain-containing protein 19
3swm_B4e-46316312170NAC domain-containing protein 19
3swm_C4e-46316312170NAC domain-containing protein 19
3swm_D4e-46316312170NAC domain-containing protein 19
3swp_A4e-46316312170NAC domain-containing protein 19
3swp_B4e-46316312170NAC domain-containing protein 19
3swp_C4e-46316312170NAC domain-containing protein 19
3swp_D4e-46316312170NAC domain-containing protein 19
4dul_A3e-4631639167NAC domain-containing protein 19
4dul_B3e-4631639167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). {ECO:0000250|UniProtKB:Q949N0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK45049.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, heat and drought stresses. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306957.10.0NAC domain-containing protein 14 isoform X4
SwissprotB5X5700.0NAC14_ARATH; NAC domain-containing protein 14
TrEMBLA0A087HSE70.0A0A087HSE7_ARAAL; Uncharacterized protein
STRINGA0A087HSE80.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.20.0NAC 014