PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK45065.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family NAC
Protein Properties Length: 312aa    MW: 35815.1 Da    PI: 8.1979
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK45065.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.18.2e-5481371129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evikevd++k+ePwdL+   ++ +  ++ewyfFs++d+ky+tg+r+nrat+sg+Wkatg+dk + +  
  KFK45065.1   8 VPPGFRFHPTDEELLHYYLKKKISYEKFEM-EVIKEVDLNKIEPWDLQDrcRIGStPQNEWYFFSHKDRKYPTGSRTNRATNSGFWKATGRDKIIRN-C 104
                 69****************************.99**************952433332556*********************************99999.9 PP

         NAM  97 gelvglkktLvfykgrapkgektdWvmheyrle 129
                  +++g++ktLvfykgrap+g+ktdW+mheyrle
  KFK45065.1 105 YKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 137
                 99*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.85E-607156IPR003441NAC domain
PROSITE profilePS5100558.548156IPR003441NAC domain
PfamPF023652.6E-289136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSSSNGGVPP GFRFHPTDEE LLHYYLKKKI SYEKFEMEVI KEVDLNKIEP WDLQDRCRIG  60
STPQNEWYFF SHKDRKYPTG SRTNRATNSG FWKATGRDKI IRNCYKKIGM RKTLVFYKGR  120
APHGQKTDWI MHEYRLEDND DDPSEDGWVV CRVFKKKNLF KVENGIGSNI NNNRLESRSF  180
KSPYNHGITT FELNKPADIG LNQYQPPMFQ SQAILTSSHH KPLSIGYDYS LALLPRESES  240
EGIQYQQGCE PSGVEVGTCK AVGEWGMVTY HTGNNDDPSR AMRFEDNNNS SSVQPPSNLL  300
SLRGENGFLG LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51815817167NO APICAL MERISTEM PROTEIN
1ut4_B3e-51815817167NO APICAL MERISTEM PROTEIN
1ut7_A3e-51815817167NO APICAL MERISTEM PROTEIN
1ut7_B3e-51815817167NO APICAL MERISTEM PROTEIN
3swm_A3e-51815820170NAC domain-containing protein 19
3swm_B3e-51815820170NAC domain-containing protein 19
3swm_C3e-51815820170NAC domain-containing protein 19
3swm_D3e-51815820170NAC domain-containing protein 19
3swp_A3e-51815820170NAC domain-containing protein 19
3swp_B3e-51815820170NAC domain-containing protein 19
3swp_C3e-51815820170NAC domain-containing protein 19
3swp_D3e-51815820170NAC domain-containing protein 19
4dul_A3e-51815817167NAC domain-containing protein 19
4dul_B3e-51815817167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with SMB and BRN2, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK45065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0270355e-88AC027035.5 Arabidopsis thaliana chromosome 1 BAC T16O9 genomic sequence, complete sequence.
GenBankCP0026845e-88CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415110.10.0protein BEARSKIN1
SwissprotQ9C8780.0BRN1_ARATH; Protein BEARSKIN1
TrEMBLA0A087HSG30.0A0A087HSG3_ARAAL; Uncharacterized protein
STRINGA0A087HSG30.0(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52132648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33280.11e-178NAC domain containing protein 15
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]