PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK45096.1
Organism
Arabis alpina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family ERF
Protein Properties Length: 178aa    MW: 20400.6 Da    PI: 4.5098
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK45096.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.3e-191765355
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++aa++ ++g
  KFK45096.1 17 YRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDAAALHFRG 65
                9******9.**********8...557**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.9E-131665IPR001471AP2/ERF domain
SMARTSM003803.0E-351679IPR001471AP2/ERF domain
PROSITE profilePS5103222.9581673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-311674IPR001471AP2/ERF domain
PRINTSPR003671.9E-101728IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-221774IPR016177DNA-binding domain
CDDcd000183.19E-191775No hitNo description
PRINTSPR003671.9E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MENNHVGQRF SVDQVSYRGV RQRKWGKWVS EIREPGKKTR IWLGSYETAE MAAAAYDAAA  60
LHFRGLGTHL NFPELADSFP RPESSSPEHV QAAAQEAALM FKPGWSTEQD IGSGQEFSRV  120
GLSPDQIQAI NEFPLDSPKM GWMQDLEVND YEELYGRFFG QCDRDEFFEM QQLQSIWD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-171778668ATERF1
3gcc_A8e-171778668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKFK45096.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006415065.11e-107ethylene-responsive transcription factor ERF022
SwissprotQ9LQ287e-96ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLA0A087HSJ41e-130A0A087HSJ4_ARAAL; Uncharacterized protein
STRINGA0A087HSJ41e-131(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.11e-96ERF family protein