PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98745.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 752aa    MW: 83690.7 Da    PI: 6.1889
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98745.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.31.9e-2199154156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 r+k +++t++q++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  KHM98745.1  99 RKKYHRHTADQIKEMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 154
                 7999************************************************9877 PP
2START227.53.9e-712714915206
                 HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT. CS
       START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg. 88 
                 +a++el+k+a+++ep+W +s     e++n+de++++f+ +++      +s+ea+r+++vv+ +l++lv+++ld++ qW+e+++    ka+t++vi++g 
  KHM98745.1 271 QAMEELIKMATVGEPLWLRSFetgrEILNYDEYVREFAVENSssgkprRSIEASRDTAVVFVDLPRLVQSFLDVN-QWKEMFPclisKAATVDVICNGe 368
                 799*****************99***************9888899*******************************.*********************** PP

                 .....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
       START  89 .....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                      ga+qlm+aelq+l+p+vp R+++fvR+++ql+a++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kv+wveh +++++ +h+++
  KHM98745.1 369 gpgrnGAVQLMFAELQMLTPMVPtREVYFVRFCKQLSAEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMY 466
                 *****************************************************98.9****************************************** PP

                 HHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 182 rslvksglaegaktwvatlqrqcek 206
                 r +v+sgla+ga++w atlq qce+
  KHM98745.1 467 RTIVNSGLAFGARHWIATLQLQCER 491
                 ***********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.3E-2385150IPR009057Homeodomain-like
SuperFamilySSF466892.76E-2088157IPR009057Homeodomain-like
PROSITE profilePS5007118.07496156IPR001356Homeobox domain
SMARTSM003891.1E-1898160IPR001356Homeobox domain
PfamPF000469.4E-1999154IPR001356Homeobox domain
CDDcd000868.70E-17103154No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084838.276258494IPR002913START domain
SuperFamilySSF559612.61E-31260491No hitNo description
CDDcd088759.09E-113262490No hitNo description
SMARTSM002347.1E-71267491IPR002913START domain
PfamPF018524.4E-56270491IPR002913START domain
Gene3DG3DSA:3.30.530.203.8E-4322486IPR023393START-like domain
SuperFamilySSF559613.3E-14513716No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
SMAADMSNNN NPPPTSHAKD FFASPALSLS LAGIFRHAGV AAADEAATSV EEGEECERLD  60
DISSENSGPT RSRSEDDFEV EAEHEDDDAD GDKNKKKKRK KYHRHTADQI KEMEALFKES  120
PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKSEIE KLKEKNKTLR  180
ETINKACCPN CGVPTTSRDG AMPTEEQQLR IENAKLKAEV EKLRAVLGKY APGSTSPSCS  240
SGHDQENRSS LDFYTGIFGL DKSRIMDTVN QAMEELIKMA TVGEPLWLRS FETGREILNY  300
DEYVREFAVE NSSSGKPRRS IEASRDTAVV FVDLPRLVQS FLDVNQWKEM FPCLISKAAT  360
VDVICNGEGP GRNGAVQLMF AELQMLTPMV PTREVYFVRF CKQLSAEQWA IVDVSIDKVE  420
DNIDASLVKC RKRPSGCIIE DKSNGHCKVI WVEHLECQKS AVHSMYRTIV NSGLAFGARH  480
WIATLQLQCE RLVFFMATNV PMKDSTGVAT LAGRKSILKL AQRMTWSFCH AIGASSFHTW  540
TKFTSKTGED IRISSRKNLN DPGEPLGLIL CAVCSVWLPV SPNVLFDFLR DETRRTEWDI  600
MSSGGTVQSI ANLAKGQDRG NAVAIQTIKS KENSVWILQD SYTNPYESMV VYASVDITGT  660
QSVMTGCDSS NLAILPSGFS IIPDGLESRP LVISSRQEEK NTEGGSLFTM AFQILTNASP  720
AAKLTMESVD SVNTLVSCTL RNIRTSLQCE DG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19499KKKKRK
294100KKKKRKK
396100KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98745.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311710.0KT031171.1 Glycine max clone HN_CCL_120 homeodomain/HOMEOBOX transcription factor (Glyma13g43350.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028205163.10.0homeobox-leucine zipper protein GLABRA 2-like
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0B2NNY50.0A0A0B2NNY5_GLYSO; Homeobox-leucine zipper protein GLABRA 2 (Fragment)
STRINGGLYMA15G01960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]