PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98826.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 157aa    MW: 17882.2 Da    PI: 6.5148
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98826.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-1293138655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +Av Y+k Lq
  KHM98826.1  93 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLDEAVAYVKFLQ 138
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.58387137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.51E-1790154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.85E-1191142No hitNo description
SMARTSM003539.7E-1393143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-993138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16100155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042335Biological Processcuticle development
GO:0016787Molecular Functionhydrolase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MQPTSGGGGL ARFRSAPASW LESVLLKEEE EEEDPLSFTQ LLSTIDDAPS HSQHQLYGTA  60
LSNKDKTPEI FMLEDSVPCR VRAKRGCATH PRSIAERVRR TRISDRIRKL QELVPNMDKQ  120
TNTADMLDEA VAYVKFLQKQ IEELSEHQRR CKCVVQE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00181DAPTransfer from AT1G35460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98826.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925900.0BT092590.1 Soybean clone JCVI-FLGm-11E18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244943.11e-114transcription factor bHLH80
SwissprotQ9C8P84e-48BH080_ARATH; Transcription factor bHLH80
TrEMBLA0A445JJ821e-113A0A445JJ82_GLYSO; Transcription factor bHLH80 isoform A
STRINGGLYMA08G26110.11e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91323043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.17e-40bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]