PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98927.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 141aa    MW: 15392.8 Da    PI: 9.7963
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98927.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP58.72.4e-182284878
         TCP  8 hskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78
                ++++hTkv+gR RRv l+ +caar+F+L++eLG ++ +          +p+i+++t+t+ s++s +    +    
  KHM98927.1 22 KKDRHTKVNGRERRVLLPPLCAARIFQLTRELGCKTHGA---------EPSIIAATSTGVSPSSMVvsasT---P 84
                79**********************************996.........**********9988855543221...1 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.7E-132169IPR005333Transcription factor, TCP
PROSITE profilePS5136992276IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MASKTPIPLK AINTKLPSLK AKKDRHTKVN GRERRVLLPP LCAARIFQLT RELGCKTHGA  60
EPSIIAATST GVSPSSMVVS ASTPTPSLSE DQNIVDMHAN SMVAPTNIEI ESKQAFLSLD  120
FDLWANFNVE YMLQSLMTRL G
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186347.12e-68transcription factor TCP20-like
TrEMBLA0A0B2NUL01e-100A0A0B2NUL0_GLYSO; Transcription factor TCP6
STRINGGLYMA11G20201.18e-68(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41030.12e-21TCP family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]