PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM98985.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 187aa    MW: 21353.6 Da    PI: 10.1946
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM98985.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.32.3e-193982649
                HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k++ qvtfskR +g++KKA+EL +LC+++vavi+fs+ ++++ +
  KHM98985.1 39 KTQGQVTFSKRCTGVFKKASELATLCGVDVAVIMFSPGNRVFSF 82
                6788************************************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-231785IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-2218108IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.182686IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-112848IPR002100Transcription factor, MADS-box
PfamPF003191.4E-204282IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-114863IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-116384IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MESNNMPDLN GVAKKTKGRQ KIEMKKMRND VDSVVQRYKT QGQVTFSKRC TGVFKKASEL  60
ATLCGVDVAV IMFSPGNRVF SFGSPSVDSV VQRYKTQGPP PLLTLDLNKV HSTVDEVELH  120
THLHCLSNQI AIEKKRTKDL NHLAKAAEDQ FWWARPIESM TDSQLDKYKK MLEEFKRQLK  180
EKRGNLN
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM98985.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358430.0AC235843.2 Glycine max clone GM_WBb0059O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589896.11e-123agamous-like MADS-box protein AGL62
RefseqXP_028184649.11e-123agamous-like MADS-box protein AGL62
TrEMBLA0A0B2NPI51e-138A0A0B2NPI5_GLYSO; Agamous-like MADS-box protein AGL62
STRINGGLYMA10G10860.11e-122(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13864521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-38AGAMOUS-like 62
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]