PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99070.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 232aa    MW: 27145.1 Da    PI: 8.673
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99070.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.47e-27959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++ rqvtfskRr g+lKK +ELSvLCda++ +iifsstgk++e+++
  KHM99070.1  9 KRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCT 59
                79***********************************************96 PP
2K-box52.12.9e-18901611687
       K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                 +  +++a L++++  L+ e+ ++lGed+  L++++L +Leq+Le+s+ +iR+++nell +q+e+l++ke+ +
  KHM99070.1  90 EFFHNMAMLRQQTIRLELEIQRYLGEDMRGLQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKEHHQ 161
                 55577899*************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
CDDcd002651.94E-37272No hitNo description
SuperFamilySSF554559.42E-30286IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PfamPF014867.7E-1686160IPR002487Transcription factor, K-box
PROSITE profilePS5129711.94288172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRGGLLK KTKELSVLCD AKIGIIIFSS TGKMREWCTE  60
PFRMEQIIEQ YQISKGTPIA ERGHDHPREE FFHNMAMLRQ QTIRLELEIQ RYLGEDMRGL  120
QYEDLTKLEQ ELENSVARIR NRQNELLQQQ MENLRRKEHH QAVLEFQKAA ATVEASKPMY  180
VMDHFSFFEE QPAGSILQLA SPMLPHFHPY LQLAQPNIQD SVRGQSYNNG IN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-16171169MEF2C
5f28_B7e-16171169MEF2C
5f28_C7e-16171169MEF2C
5f28_D7e-16171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-67AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025983119.11e-171MADS-box transcription factor 23 isoform X2
SwissprotQ9ATE52e-59FBP24_PETHY; MADS-box protein FBP24
TrEMBLA0A0B2NPR11e-172A0A0B2NPR1_GLYSO; MADS-box protein FBP24
STRINGGLYMA20G00401.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.37e-49MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]