PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99149.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 238aa    MW: 26516.8 Da    PI: 8.2081
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99149.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.33.7e-36341242101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF++++F++g+k+ll++i+
    KHM99149.1  34 FLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNEYFRRGEKRLLCEIQ 121
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
    KHM99149.1 122 RRK 124
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3823118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-5530123IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3531123IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.9E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.6E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MAKLPVEYNG DCATTASASA SAAAESQRSI PTPFLTKTFQ LVDDQSIDDV ISWNDDGSTF  60
IVWNPTVFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVVPD RWEFSNEYFR RGEKRLLCEI  120
QRRKISGSRE SGMTAVKPLD LMPVKRSSGE DAADTVPKEI NLIPNPKLFG VAIGAKRARE  180
GGGGGDCGGG GEEDTLLRLH HAGSADVKSE PLDFQNHREN QKTPWLSPCY RTNQRVCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-233412329129Heat shock factor protein 1
5d5v_B4e-233412329129Heat shock factor protein 1
5d5v_D4e-233412329129Heat shock factor protein 1
5d8k_B4e-23341295110Heat shock factor protein 2
5d8l_B4e-23341295110Heat shock factor protein 2
5d8l_D4e-23341295110Heat shock factor protein 2
5d8l_F4e-23341295110Heat shock factor protein 2
5d8l_H4e-23341295110Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99149.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8963070.0JN896307.1 Glycine max heat shock transcription factor HSFB2a mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304383.24e-81heat stress transcription factor 18
RefseqXP_028181242.14e-81heat stress transcription factor B-2a-like
SwissprotQ9SCW42e-60HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A0B2NQ251e-178A0A0B2NQ25_GLYSO; Heat stress transcription factor B-2a
STRINGGLYMA09G26510.11e-80(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.12e-61heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]