PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHM99242.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 216aa    MW: 24521.7 Da    PI: 8.9206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHM99242.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.11.8e-28141401128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp+G+rF+P+de l  +yL+k++ +++ +  + i+++d+y++ Pw+Lp    +++ +w  +fF+  +++   ++ ++r + +g W++  k ++   +k+
  KHM99242.1  14 LPVGYRFDPSDEILAGYYLRKRIMAQPSPN-DLIQDCDVYQTVPWELPGG-GSKNLNWqrFFFHDLRTRVF-ENLNKREAGNGQWRTIEKAQDFELSKE 109
                 799************************999.99***************43.23344565588888877765.5677788899**************9** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                 ++v  k++L+f++++ +   k++Wvmhe+rl
  KHM99242.1 110 QVVARKNVLAFWEAKGNGFAKSNWVMHEFRL 140
                 *************999999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3111160IPR003441NAC domain
PROSITE profilePS5100532.32614160IPR003441NAC domain
PfamPF023659.9E-1615140IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MEVLNPIEGK TYKLPVGYRF DPSDEILAGY YLRKRIMAQP SPNDLIQDCD VYQTVPWELP  60
GGGSKNLNWQ RFFFHDLRTR VFENLNKREA GNGQWRTIEK AQDFELSKEQ VVARKNVLAF  120
WEAKGNGFAK SNWVMHEFRL VSKSHPSMVS AMAVYRIFKT KKEGRKGKKA KRSEGETSSS  180
SSSEEEAMDE TPIVIDFTME NGTVTGPPSP ATSEAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-141416617171NO APICAL MERISTEM PROTEIN
1ut4_B2e-141416617171NO APICAL MERISTEM PROTEIN
1ut7_A2e-141416617171NO APICAL MERISTEM PROTEIN
1ut7_B2e-141416617171NO APICAL MERISTEM PROTEIN
4dul_A2e-141416617171NAC domain-containing protein 19
4dul_B2e-141416617171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHM99242.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0896840.0BT089684.1 Soybean clone JCVI-FLGm-2H21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237944.11e-162uncharacterized protein LOC100305869
RefseqXP_028206093.11e-162NAC domain-containing protein 83-like
TrEMBLA0A0B2NVK91e-160A0A0B2NVK9_GLYSO; NAC domain-containing protein 83
TrEMBLC6SWZ01e-160C6SWZ0_SOYBN; Uncharacterized protein
STRINGGLYMA16G05620.11e-161(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134131127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-22NAC domain containing protein 83
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]